Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   OCV30_RS08680 Genome accession   NZ_AP025460
Coordinates   1946759..1947940 (+) Length   393 a.a.
NCBI ID   WP_065678673.1    Uniprot ID   A0A1C3IN33
Organism   Vibrio atlanticus strain CECT 7223     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1941759..1952940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS08660 - 1942236..1943012 (+) 777 WP_048611816.1 RelA/SpoT domain-containing protein -
  OCV30_RS08665 ihfA 1943299..1943595 (-) 297 WP_004734853.1 integration host factor subunit alpha -
  OCV30_RS08670 - 1944064..1944957 (-) 894 WP_065678671.1 EamA family transporter -
  OCV30_RS08675 - 1945061..1946443 (+) 1383 WP_065678672.1 PLP-dependent aminotransferase family protein -
  OCV30_RS08680 cqsA 1946759..1947940 (+) 1182 WP_065678673.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  OCV30_RS08685 - 1948118..1950166 (-) 2049 WP_065678674.1 hybrid sensor histidine kinase/response regulator -
  OCV30_RS08690 - 1950438..1951253 (-) 816 WP_065678675.1 TauD/TfdA dioxygenase family protein -
  OCV30_RS08695 - 1951763..1952164 (+) 402 WP_065678676.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43802.89 Da        Isoelectric Point: 6.2959

>NTDB_id=91641 OCV30_RS08680 WP_065678673.1 1946759..1947940(+) (cqsA) [Vibrio atlanticus strain CECT 7223]
MSDTTKNKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPQRNAVVMQSNDYLALSHNKPIQDAHQAAIIEHDDNVVMS
AIFLQDEESKPAFETELANYVGMESCLLSQSGWAANIGLLQTICPPDTSVYIDFFAHMSLWEGIRAAGGIAHPFMHNNMN
HLRKQLERHGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGIVHALGLTKQVDFITVSLAK
TFAYRAGAILGPKLLSETLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGADDKRQALFQRAKSLTTGLKRIGFNIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSVNADMTPRDIDHVLTVCHEAYHHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=91641 OCV30_RS08680 WP_065678673.1 1946759..1947940(+) (cqsA) [Vibrio atlanticus strain CECT 7223]
ATGAGTGATACAACAAAAAACAAACCACTACCTTCCTTTATCGAAGAACGCTTGAACTTCTATATTCAAGACCTCATTAC
CCAGAACCAAAGCCAAAAGCACTTGGTATTGGGTAAACGACCTCAGCGCAACGCCGTCGTGATGCAGAGCAATGATTACT
TAGCACTGTCACACAACAAACCGATTCAAGACGCCCATCAAGCGGCGATTATCGAACACGATGACAACGTAGTGATGTCT
GCAATTTTTTTACAAGATGAAGAGTCTAAACCTGCGTTTGAAACCGAGCTCGCGAACTATGTCGGAATGGAGAGCTGTTT
GCTTTCTCAGTCAGGTTGGGCGGCCAATATTGGACTATTACAAACCATCTGCCCGCCGGACACATCGGTGTATATCGACT
TTTTTGCCCATATGTCGCTATGGGAAGGCATTCGTGCCGCTGGCGGCATCGCCCACCCGTTTATGCATAACAATATGAAT
CACCTGCGTAAACAGTTAGAGCGCCACGGCTCAGGCGTTATTGTGGTCGATTCGGTTTACAGTACCATTGGGACCATCGC
CCCACTACGCGACATCTACGAAATGGCGCAGGAGTTTGATTGTGCCGTCGTCGTTGATGAATCGCATTCATTGGGCACGC
ATGGGGAAAATGGTGCCGGCATAGTTCACGCATTGGGCCTTACAAAGCAAGTCGACTTCATCACCGTAAGTTTGGCTAAA
ACCTTTGCTTATCGTGCAGGCGCGATCCTTGGACCAAAACTACTTTCAGAAACCTTACCGTTTGTTGCTTATCCCGCGAT
TTTCAGCTCGACCGTGTTACCACAAGAGGTGGTCCGTTTAGAGAAAACATTAGAGGTAATCAAAGGTGCAGATGATAAAC
GACAGGCTCTGTTCCAGCGTGCTAAATCGTTGACTACGGGTCTAAAACGAATTGGCTTTAATATCCGCAGCGAGTCTCAA
ATTGTGGCATTAGAATGTGGTAGTGAAAGAAACACTGAACGTGTTCGCGATTTCCTCGAAGAACGGAATGTGTTCGGTGC
GGTGTTCTGCCGCCCCGCTACGGGCAAGAACAAGAACATCATCCGATTTTCAGTGAATGCCGATATGACACCACGAGACA
TTGACCATGTGCTCACCGTTTGTCACGAAGCGTACCATCACCCAGAGTTAGAGTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3IN33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55

Multiple sequence alignment