Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VKI22_RS02590 Genome accession   NZ_CP141254
Coordinates   587295..587669 (-) Length   124 a.a.
NCBI ID   WP_041922412.1    Uniprot ID   A0A844GN83
Organism   Cyanobacterium aponinum UTEX 3221     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 582295..592669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKI22_RS02580 (VKI22_02580) purL 583136..585415 (-) 2280 WP_324282555.1 phosphoribosylformylglycinamidine synthase subunit PurL -
  VKI22_RS02585 (VKI22_02585) trmFO 585765..587129 (-) 1365 WP_324282556.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  VKI22_RS02590 (VKI22_02590) pilH 587295..587669 (-) 375 WP_041922412.1 PleD family two-component system response regulator Machinery gene
  VKI22_RS02595 (VKI22_02595) thiL 587781..588770 (-) 990 WP_324282557.1 thiamine-phosphate kinase -
  VKI22_RS02600 (VKI22_02600) - 588841..589368 (-) 528 WP_015218484.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 14118.50 Da        Isoelectric Point: 6.7140

>NTDB_id=916402 VKI22_RS02590 WP_041922412.1 587295..587669(-) (pilH) [Cyanobacterium aponinum UTEX 3221]
MIKILVVDDNHTPREVISEALKQFNIQVTEASNGVEATKIIEKEKFNLVITDVVMPEMNGYELCRWIKSNPGTEKVPVII
CSTKGEEFDIHWATKQGADAYIIKPFKTMELLKTIKYLLKHNVG

Nucleotide


Download         Length: 375 bp        

>NTDB_id=916402 VKI22_RS02590 WP_041922412.1 587295..587669(-) (pilH) [Cyanobacterium aponinum UTEX 3221]
ATGATTAAAATTTTAGTAGTCGATGATAATCACACACCCAGAGAAGTGATCAGCGAAGCACTGAAACAGTTTAATATCCA
AGTAACCGAAGCATCCAATGGGGTAGAGGCAACCAAAATAATTGAGAAAGAAAAATTTAACCTCGTAATTACTGATGTAG
TGATGCCTGAAATGAATGGCTATGAATTATGTCGTTGGATAAAAAGTAATCCAGGAACAGAAAAAGTCCCTGTAATCATT
TGCTCTACAAAAGGAGAAGAATTTGATATTCACTGGGCAACAAAACAAGGGGCGGATGCTTATATTATTAAGCCTTTTAA
AACGATGGAATTATTAAAAACCATTAAATATTTACTTAAGCATAATGTAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A844GN83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

55.372

97.581

0.54