Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OCV30_RS08630 Genome accession   NZ_AP025460
Coordinates   1936040..1937464 (+) Length   474 a.a.
NCBI ID   WP_017091224.1    Uniprot ID   A0A7W4C9H0
Organism   Vibrio atlanticus strain CECT 7223     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1931040..1942464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS08605 - 1931065..1931826 (+) 762 WP_017102192.1 YdcF family protein -
  OCV30_RS08610 - 1931975..1932496 (-) 522 WP_004734880.1 DUF2058 domain-containing protein -
  OCV30_RS08615 - 1932671..1933714 (-) 1044 WP_065678665.1 AraC family transcriptional regulator -
  OCV30_RS08620 - 1933884..1934897 (+) 1014 WP_065678666.1 DUF2804 domain-containing protein -
  OCV30_RS08625 - 1934985..1935833 (+) 849 WP_065678667.1 sterol desaturase family protein -
  OCV30_RS08630 sbcB 1936040..1937464 (+) 1425 WP_017091224.1 exodeoxyribonuclease I Machinery gene
  OCV30_RS08635 - 1937490..1937861 (+) 372 WP_065678668.1 CidA/LrgA family protein -
  OCV30_RS08640 - 1937864..1938541 (+) 678 WP_017099721.1 LrgB family protein -
  OCV30_RS08645 cdd 1938899..1939786 (+) 888 WP_065678669.1 cytidine deaminase -
  OCV30_RS08650 purT 1939954..1941129 (+) 1176 WP_065678670.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  OCV30_RS08655 - 1941258..1941911 (-) 654 WP_048658502.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54626.88 Da        Isoelectric Point: 4.8684

>NTDB_id=91640 OCV30_RS08630 WP_017091224.1 1936040..1937464(+) (sbcB) [Vibrio atlanticus strain CECT 7223]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPSPLLELDADELRDRLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFGDE
RIKPLLFRYRARHFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=91640 OCV30_RS08630 WP_017091224.1 1936040..1937464(+) (sbcB) [Vibrio atlanticus strain CECT 7223]
ATGAGTTCAGATAATCAGCCGACCTACTTCTTTTTCGATTACGAAACGTGGGGCGTTAGCCCAGCAAAAGACCGTCCGAG
TCAGTTTGCGGGTGTTCGTACCGACCAAGATTTCAATGTTATTGGAGAGCCTCTGGTTATCTATTGCCAACCTCCTGCTG
ATTACCTTCCTGCGCCTGAAGCTGCACTGATCACCCGTATCACACCACAAAAAGCAGCTTCACAAGGTCTTCCTGAGCCG
GAGTTTATCGCTAAGATCCATGCTGAGTTAGCCAAACCAAACACCACAAGCCTTGGCTACAACAGTATCCGATTCGATGA
TGAAGTAACGCGTTACACCTGTTACCGAAATTTCATTGACCCATATGCGTGGAGCTGGCAGAACGGCAACTCACGTTGGG
ATCTATTAGATGTAATGCGCGCTGTTCACGCACTGCGCCCTGAAGGCATTGTTTGGCCAGAGAACGAAGAAGGTTATCCA
AGTTTCAAACTGGAACACCTATCTGTGGCAAACGGCATTGAACACGAGAACGCGCACGATGCGATGGCAGATGTTATTGC
GACCATCGAACTGGCTAAGAAGTTAAAGGCCGCACAACCTAAGATGTTTGATTACCTCTACAACATGCGTCATAAGCGTA
AGCTGAATGACCTGGTTGATATTGTAAACATGACACCATTGATGCACGTTTCGGGCATGTTTGGCCGTGACTGCAACTAC
ACAAGTTGGATTGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCCGTTATCGTGGTTGATTTAGCCAAAGATCCAAG
CCCACTGTTAGAACTGGACGCTGATGAACTCAGAGACAGACTCTACACCAAACGCAGTGAACTGGGTGAAGACGAGCTAC
CCGTACCAATCAAATTGGTTCAACTGAACAAGTGCCCTATTCTTGCTCCAGCTAAAACGCTGACGGCTGAAAATGCCGAA
ACCATCGGTATTGATCGCCAACAATGCTTGAAGAACTTGGCACTGCTGCGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGCCTGTACTCACAAGAGCGAGAGTACGAAAAGAGTGATGATGTTGATACACACCTTTATGACGGTTTCTTCTCACCTG
CTGATAAAACAGCGATGAACATCATTCGCGAAACTGACCCAAATAACTTGGCAGCTTTAGATATCACCTTCGGTGATGAA
CGTATTAAACCGTTACTGTTCCGTTACCGTGCTCGTCATTTTCCATGGACGCTCGACGAAGCTGAGCAATTGAAATGGGC
GAACCATTGTCGTGAGTTTTATGAAAGCCGTTTAGAAGAGTACATGCTCAACCTTGAAAACCTCGCGCATGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAATACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4C9H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

76.744

99.789

0.766

Multiple sequence alignment