Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV30_RS07620 Genome accession   NZ_AP025460
Coordinates   1729671..1731182 (+) Length   503 a.a.
NCBI ID   WP_065680402.1    Uniprot ID   A0A1C3J552
Organism   Vibrio atlanticus strain CECT 7223     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1724671..1736182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV30_RS07600 - 1725107..1726099 (+) 993 WP_065680399.1 ABC transporter substrate-binding protein -
  OCV30_RS07605 - 1726247..1727146 (+) 900 WP_065680400.1 ABC transporter permease -
  OCV30_RS07610 - 1727139..1728371 (+) 1233 WP_065680401.1 quaternary amine ABC transporter ATP-binding protein -
  OCV30_RS07615 - 1729044..1729448 (+) 405 WP_009846763.1 Hpt domain-containing protein -
  OCV30_RS07620 luxO 1729671..1731182 (+) 1512 WP_065680402.1 sigma-54-dependent transcriptional regulator Regulator
  OCV30_RS07625 - 1731163..1732269 (+) 1107 WP_065680403.1 glycosyltransferase family 4 protein -
  OCV30_RS07630 - 1732509..1733885 (+) 1377 WP_065680404.1 O-antigen ligase family protein -
  OCV30_RS07635 - 1733978..1734763 (+) 786 WP_009846767.1 acyltransferase -
  OCV30_RS07640 - 1734756..1735874 (+) 1119 WP_065680405.1 glycosyltransferase -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 56288.52 Da        Isoelectric Point: 5.8231

>NTDB_id=91639 OCV30_RS07620 WP_065680402.1 1729671..1731182(+) (luxO) [Vibrio atlanticus strain CECT 7223]
MRPKVLLVEDSTSLAVLYKQYVKDEPYDIFHVETGAEAKTFIERHIPQLVILDLKLPDMPGEEVLDWISENEIPTAVVIA
TAHGSVNIAVDLIQRGAEDFLEKPIQADRLKTSVRLHLRRAKLENLVDNMQSKFDRDRFHNFIGSCLPMQAVYKIIDSVA
PTTASVFINGESGTGKEVCAEAIHQESQRNGKPFVAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAAMQAHGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGNREIKVDVRIICATNRDPLVEVEEGRFREDLYYRVHVVPIEMPPLRERGSDI
VTLANHFLKLYAKQDKKKFKSIDKETQNLLKRYAWPGNVRQLQNIIRNIVVLNNETSVTKDMLPPPINKADAAPTSKSVT
PIRVAVPQPAVVEDPEAKLPPITPEELEQSSVVPTSNGSMTPVFTTSEGAIRPMWQIEREAIQHAINHCDGNVLNAAVLL
ELSPSTVYRKKQAWESEDECNQA

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=91639 OCV30_RS07620 WP_065680402.1 1729671..1731182(+) (luxO) [Vibrio atlanticus strain CECT 7223]
ATGCGCCCTAAGGTATTGTTAGTTGAAGACTCCACCTCACTTGCTGTGCTCTACAAGCAGTACGTAAAAGACGAGCCCTA
CGATATTTTTCACGTCGAAACCGGCGCTGAAGCAAAAACCTTCATTGAAAGGCATATACCACAACTCGTGATTCTCGATT
TAAAGTTACCGGATATGCCGGGTGAAGAAGTGTTGGATTGGATCAGTGAGAATGAAATCCCGACAGCTGTTGTTATCGCA
ACTGCGCACGGTTCAGTAAACATCGCGGTAGATCTCATCCAACGCGGTGCGGAAGACTTCTTAGAAAAACCCATTCAAGC
CGATCGCCTTAAAACGTCAGTTCGCTTACACCTGCGCCGAGCGAAACTCGAAAACCTTGTCGATAACATGCAAAGCAAGT
TCGATCGTGATCGCTTTCATAATTTCATCGGTTCTTGTCTGCCAATGCAGGCGGTTTACAAGATCATTGATTCCGTGGCA
CCAACGACTGCCAGCGTGTTCATCAACGGCGAAAGTGGCACGGGTAAGGAAGTGTGTGCAGAAGCCATTCATCAGGAGAG
CCAGCGTAACGGTAAACCCTTCGTTGCCATTAACTGTGGCGCTATCCCTCGAGATCTAATGGAAAGTGAAATCTTCGGTC
ATGTTAAAGGTGCGTTTACCGGCGCAACAACCGACCGTAAAGGCGCAGCCATGCAAGCGCATGGTGGTACCCTATTTCTC
GATGAGCTTTGTGAAATGGAACTGGAGATGCAAAAGAAGCTCCTACGATTTCTGCAAACCGGTACATTTACTCCACTCGG
TGGTAACCGTGAAATCAAAGTTGATGTCAGAATTATCTGTGCAACCAACCGCGACCCACTGGTTGAGGTAGAAGAAGGAC
GTTTTAGAGAAGATCTTTACTATCGTGTTCACGTTGTGCCTATCGAAATGCCACCGTTACGCGAACGAGGAAGTGACATT
GTGACTTTGGCTAATCACTTTTTGAAACTGTATGCGAAACAAGACAAGAAAAAGTTCAAATCAATAGACAAAGAAACGCA
AAATCTACTTAAACGTTATGCGTGGCCAGGCAACGTACGTCAGTTGCAAAACATCATCCGTAACATCGTGGTGTTGAACA
ATGAAACAAGCGTAACCAAAGACATGTTGCCGCCTCCGATTAATAAAGCAGATGCTGCTCCAACATCGAAATCAGTGACG
CCTATTCGAGTCGCGGTGCCCCAACCTGCTGTTGTAGAAGATCCAGAAGCTAAGTTACCACCTATTACACCAGAAGAGTT
GGAGCAATCGTCAGTTGTCCCAACTAGCAACGGTTCGATGACGCCTGTATTCACCACAAGCGAAGGTGCTATTCGTCCAA
TGTGGCAAATAGAACGCGAAGCTATTCAACATGCCATCAATCATTGCGATGGGAATGTGTTAAATGCCGCCGTGTTGTTA
GAGCTTAGCCCTTCTACTGTTTACCGTAAGAAACAGGCTTGGGAATCGGAAGATGAGTGCAATCAAGCCTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(454-490)

Sigma-54 interaction domain (Sigma54_activat)

(143-309)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3J552

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.489

97.217

0.481

Multiple sequence alignment