Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   U2H13_RS20080 Genome accession   NZ_CP141181
Coordinates   4071410..4071928 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus sp. A1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4066410..4076928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2H13_RS20050 (U2H13_20020) - 4067609..4067989 (-) 381 WP_094296144.1 VOC family protein -
  U2H13_RS20055 (U2H13_20025) - 4068045..4068983 (-) 939 WP_025650114.1 LacI family DNA-binding transcriptional regulator -
  U2H13_RS20060 (U2H13_20030) xth 4069046..4069804 (-) 759 WP_025650115.1 exodeoxyribonuclease III -
  U2H13_RS20065 (U2H13_20035) - 4069801..4070358 (-) 558 WP_017418439.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  U2H13_RS20070 (U2H13_20040) - 4070355..4070936 (-) 582 WP_017418438.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  U2H13_RS20075 (U2H13_20045) rpsR 4071127..4071366 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  U2H13_RS20080 (U2H13_20050) ssbA 4071410..4071928 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  U2H13_RS20085 (U2H13_20055) rpsF 4071968..4072255 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  U2H13_RS20090 (U2H13_20060) ychF 4072367..4073467 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  U2H13_RS20095 (U2H13_20065) - 4073593..4075596 (-) 2004 WP_121984318.1 molybdopterin-dependent oxidoreductase -
  U2H13_RS20100 (U2H13_20070) - 4075643..4075849 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=916286 U2H13_RS20080 WP_004392979.1 4071410..4071928(-) (ssbA) [Bacillus sp. A1]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=916286 U2H13_RS20080 WP_004392979.1 4071410..4071928(-) (ssbA) [Bacillus sp. A1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCTGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378