Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   U2H13_RS18315 Genome accession   NZ_CP141181
Coordinates   3722972..3724117 (+) Length   381 a.a.
NCBI ID   WP_376700566.1    Uniprot ID   -
Organism   Bacillus sp. A1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3717972..3729117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2H13_RS18295 (U2H13_18265) - 3718447..3719163 (-) 717 WP_014419126.1 Crp/Fnr family transcriptional regulator -
  U2H13_RS18300 (U2H13_18270) narK 3719261..3720451 (-) 1191 WP_032875893.1 nitrate transporter NarK -
  U2H13_RS18305 (U2H13_18275) argS 3720585..3722255 (-) 1671 WP_160216625.1 arginine--tRNA ligase -
  U2H13_RS18310 (U2H13_18280) - 3722252..3722680 (-) 429 WP_014419128.1 DUF1934 domain-containing protein -
  U2H13_RS18315 (U2H13_18285) rapF 3722972..3724117 (+) 1146 WP_376700566.1 tetratricopeptide repeat protein Regulator
  U2H13_RS18320 (U2H13_18290) - 3724101..3724220 (+) 120 WP_021494790.1 PhrC/PhrF family phosphatase-inhibitory pheromone -
  U2H13_RS18325 (U2H13_18295) - 3724418..3724621 (+) 204 WP_003151064.1 helix-turn-helix transcriptional regulator -
  U2H13_RS18330 (U2H13_18300) - 3724635..3724838 (+) 204 WP_007407641.1 hypothetical protein -
  U2H13_RS18335 (U2H13_18305) - 3724873..3725058 (+) 186 WP_376700568.1 DUF4177 domain-containing protein -
  U2H13_RS18340 (U2H13_18310) - 3725245..3725526 (+) 282 WP_007407643.1 hypothetical protein -
  U2H13_RS18345 (U2H13_18315) - 3725570..3726082 (+) 513 WP_031304384.1 stage II sporulation protein M -
  U2H13_RS18350 (U2H13_18320) - 3726673..3726891 (-) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  U2H13_RS18355 (U2H13_18325) speB 3727046..3727918 (-) 873 WP_053285340.1 agmatinase -
  U2H13_RS18360 (U2H13_18330) speE 3727977..3728807 (-) 831 WP_003151052.1 spermidine synthase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45553.59 Da        Isoelectric Point: 4.5769

>NTDB_id=916283 U2H13_RS18315 WP_376700566.1 3722972..3724117(+) (rapF) [Bacillus sp. A1]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVKDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNTAIARQYHDKGISYAEEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLRDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=916283 U2H13_RS18315 WP_376700566.1 3722972..3724117(+) (rapF) [Bacillus sp. A1]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCAAAGATTGTATCGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGACTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATAAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTCCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATACGGCCATAGCCAGACAATATCATGACAAAGGGATATCTTATGCAGAGG
AGGCAGAAGATTCCCTATATATAGCCGAGTATGAATTTTTAGAATCTTTATATGTCGGTGAGCCTGATGAAGAAGCAATC
ATGGAATGTTTTGACTTTCTCAGAGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
TCATGAAAGAGAAAATTTCGAGAAGGCTTCCGCATATTTTTTAAAGGTGGAAGAAACAAGACAGCAGATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(189-253)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

78.478

100

0.785
  rapC Bacillus subtilis subsp. subtilis str. 168

56.579

99.738

0.564