Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   OCU36_RS14480 Genome accession   NZ_AP025459
Coordinates   79042..80136 (-) Length   364 a.a.
NCBI ID   WP_261840276.1    Uniprot ID   -
Organism   Vibrio artabrorum strain CECT 7226     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 74042..85136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU36_RS14460 yegD 74075..75427 (-) 1353 WP_261840272.1 molecular chaperone -
  OCU36_RS14465 - 75589..75897 (+) 309 WP_261840273.1 cysteine-rich CWC family protein -
  OCU36_RS14470 - 75977..76327 (-) 351 WP_261840274.1 HopJ type III effector protein -
  OCU36_RS14475 luxQ 76472..79042 (-) 2571 WP_261840275.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  OCU36_RS14480 luxP 79042..80136 (-) 1095 WP_261840276.1 substrate-binding domain-containing protein Regulator
  OCU36_RS14485 - 80443..80757 (-) 315 WP_261840277.1 GIY-YIG nuclease family protein -
  OCU36_RS14490 - 80771..81427 (-) 657 WP_261840278.1 YceH family protein -
  OCU36_RS14495 - 81491..81691 (-) 201 WP_261840279.1 hypothetical protein -
  OCU36_RS14500 - 81887..82201 (+) 315 WP_261840280.1 DUF496 family protein -
  OCU36_RS14505 - 82382..84943 (-) 2562 WP_261840764.1 ATP-binding protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41042.69 Da        Isoelectric Point: 5.3146

>NTDB_id=91627 OCU36_RS14480 WP_261840276.1 79042..80136(-) (luxP) [Vibrio artabrorum strain CECT 7226]
MKRLLMLFGLAVFSATALSDETHVLNGYWGYQEYLSTFPEQKTLTDKMIEAVKSSPVPLKRSQDKPVTIAVVYPGQQISD
YWVRNIKAFEKRLDLLGINYKINQVFTRVNADLVQQSISLKEAIENKMDYLIFTLDTTRHRKFIEHVLNSTDTKLILQNI
TTPVRVWADRQPLMYVGFDHVIGSLMLADYFKSVAKPSSQYSVLYRSEGHISDARGDTFIHELDSDTDFILKSSFYTKSD
KESGYQAAKISIAKDKDLDFIYACSTDVALGAVKAIRESGSDILINGWGGGSAELEAIEKGDLDVTVMRINDDTGIAMAE
AIKWDLEGAEVPTVYSGEFKVVTKDDTAERISELKKRAFRYSDQ

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=91627 OCU36_RS14480 WP_261840276.1 79042..80136(-) (luxP) [Vibrio artabrorum strain CECT 7226]
ATGAAACGTTTATTGATGTTGTTTGGACTGGCCGTATTTTCCGCGACCGCCCTCTCTGATGAAACCCATGTCCTTAATGG
CTATTGGGGATACCAAGAGTACCTTTCCACGTTCCCCGAACAAAAAACGCTAACCGATAAAATGATTGAAGCGGTGAAGA
GTTCCCCAGTGCCTTTGAAGCGTTCTCAAGACAAGCCTGTTACGATTGCTGTTGTGTATCCAGGCCAACAGATCTCCGAT
TATTGGGTTCGAAATATCAAAGCTTTTGAGAAGCGTCTCGATTTGTTAGGTATTAATTATAAAATAAATCAAGTGTTTAC
TCGTGTTAATGCTGATTTGGTTCAACAAAGTATCTCGCTGAAAGAGGCGATTGAAAACAAGATGGATTACTTGATCTTCA
CGTTAGATACTACGCGACATCGCAAGTTTATTGAGCACGTACTGAACTCTACAGACACCAAACTGATTCTACAAAATATC
ACAACACCAGTACGAGTGTGGGCGGATAGGCAGCCGCTCATGTATGTGGGGTTTGATCATGTGATAGGCAGTTTAATGTT
GGCGGATTATTTTAAATCGGTAGCGAAACCAAGTAGTCAATACTCCGTTCTATATCGGTCTGAAGGTCATATCAGTGATG
CTCGCGGGGATACTTTTATCCATGAGTTAGATAGTGATACTGATTTTATTCTCAAGTCTTCGTTTTACACAAAATCAGAC
AAAGAAAGTGGCTATCAAGCCGCTAAAATCAGCATTGCGAAAGATAAGGATCTAGACTTTATTTATGCATGTTCAACGGA
TGTCGCTCTGGGGGCAGTAAAGGCGATTCGTGAGTCAGGTAGCGATATTTTAATCAACGGCTGGGGAGGCGGCTCAGCTG
AGCTTGAAGCTATTGAAAAAGGCGACTTAGATGTGACCGTTATGAGAATAAATGACGATACGGGGATTGCAATGGCTGAG
GCCATCAAATGGGACCTTGAGGGGGCGGAAGTTCCTACGGTTTACTCGGGTGAGTTTAAAGTTGTGACTAAAGATGATAC
GGCAGAACGCATTTCAGAACTTAAGAAGCGAGCATTTAGGTACTCAGATCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

62.5

100

0.632

Multiple sequence alignment