Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   U2H13_RS13290 Genome accession   NZ_CP141181
Coordinates   2715629..2716381 (-) Length   250 a.a.
NCBI ID   WP_094296064.1    Uniprot ID   -
Organism   Bacillus sp. A1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2710629..2721381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2H13_RS13265 (U2H13_13240) mreC 2711065..2711928 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  U2H13_RS13270 (U2H13_13245) mreB 2711959..2712972 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  U2H13_RS13275 (U2H13_13250) radC 2713064..2713759 (-) 696 WP_007408165.1 DNA repair protein RadC -
  U2H13_RS13280 (U2H13_13255) - 2713791..2714360 (-) 570 WP_012118105.1 nucleoside triphosphate pyrophosphatase -
  U2H13_RS13285 (U2H13_13260) - 2714501..2715502 (-) 1002 WP_065180394.1 SPOR domain-containing protein -
  U2H13_RS13290 (U2H13_13265) comC 2715629..2716381 (-) 753 WP_094296064.1 A24 family peptidase Machinery gene
  U2H13_RS13295 (U2H13_13270) - 2716521..2717813 (-) 1293 WP_376700493.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  U2H13_RS13300 (U2H13_13275) - 2717872..2720514 (-) 2643 WP_022552877.1 valine--tRNA ligase -
  U2H13_RS13305 (U2H13_13280) - 2720967..2721158 (+) 192 WP_003152639.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27294.02 Da        Isoelectric Point: 9.4293

>NTDB_id=916265 U2H13_RS13290 WP_094296064.1 2715629..2716381(-) (comC) [Bacillus sp. A1]
MLLFLFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDTWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLPLGVKLVLIAFFLSVMIGTVYGMCAAARGRLGKKQPFPFAPAISAGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=916265 U2H13_RS13290 WP_094296064.1 2715629..2716381(-) (comC) [Bacillus sp. A1]
GTGCTTTTGTTTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGTCGTATCCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATACATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGCCGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAACCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGAGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGAGCTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

57.661

99.2

0.572