Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   U2H13_RS11950 Genome accession   NZ_CP141181
Coordinates   2476625..2478355 (-) Length   576 a.a.
NCBI ID   WP_007408359.1    Uniprot ID   I2C7K7
Organism   Bacillus sp. A1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2471625..2483355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2H13_RS11925 (U2H13_11910) - 2472047..2472259 (+) 213 WP_029973891.1 spore germination protein -
  U2H13_RS11930 (U2H13_11915) - 2472384..2472596 (+) 213 WP_014418351.1 spore germination protein -
  U2H13_RS11935 (U2H13_11920) alr 2472771..2473952 (+) 1182 WP_021494302.1 alanine racemase -
  U2H13_RS11940 (U2H13_11925) spo0A 2474100..2474900 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  U2H13_RS11945 (U2H13_11930) spoIVB 2475181..2476461 (-) 1281 WP_007408360.1 SpoIVB peptidase -
  U2H13_RS11950 (U2H13_11935) recN 2476625..2478355 (-) 1731 WP_007408359.1 DNA repair protein RecN Machinery gene
  U2H13_RS11955 (U2H13_11940) ahrC 2478387..2478836 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  U2H13_RS11960 (U2H13_11945) - 2478933..2479778 (-) 846 WP_021494303.1 TlyA family RNA methyltransferase -
  U2H13_RS11965 (U2H13_11950) dxs 2479775..2481676 (-) 1902 WP_160216924.1 1-deoxy-D-xylulose-5-phosphate synthase -
  U2H13_RS11970 (U2H13_11955) - 2481820..2482710 (-) 891 WP_007408353.1 polyprenyl synthetase family protein -
  U2H13_RS11975 (U2H13_11960) - 2482700..2482954 (-) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64079.91 Da        Isoelectric Point: 4.7628

>NTDB_id=916249 U2H13_RS11950 WP_007408359.1 2476625..2478355(-) (recN) [Bacillus sp. A1]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDRFAGAEAESALQ
AYHEGYERYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLAMKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=916249 U2H13_RS11950 WP_007408359.1 2476625..2478355(-) (recN) [Bacillus sp. A1]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAGCGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTATTAGTCGGCGGCCGCGGCTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTATTGGACAGCGGTCATCCCGTGTTTGAAGTATGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGGGACATCAATGCCGGAGGAAAAAGCGTCTGCCG
TGTCAACGGAAAATTAGTGACGATTGCGGCTTTAAGGGAAATCGGCAGACTTTTATTAGATATTCACGGACAGCATGATA
ACCAGCTGTTAATGGAAGATGACAAACACTTGGAGCTTTTGGACAGGTTTGCGGGCGCTGAGGCCGAATCCGCGCTTCAG
GCTTACCATGAAGGCTATGAGCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCAGAAAGCGAGCAGGAAATGGC
GCATCGGTTAGACCTGATTCAATTTCAGCTTGAAGAAATCGAGTCGGCGAAGCTTGAATTGAATGAAGACGAGCTTCTAC
AGGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGCGAG
CAGGGTGGGCTTGACTGGGTCGGAATGGCCTCTGCCCAGCTTGAAGATATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCTGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAGGATGCCACCTTTCAGATGCGCAATCTGTTAGATGATCTGGAAT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATTAAACAGCTGAAGCGCAAATACGGAGCGACGGTA
GAAGACATTTTGGAATACGGCTCCAAAATAGAAGAGGAAATCGATCAAATCGAGAACCGCGACAGCCACCTTGAAGCGCT
GAAGAAGGAACTGGAGTCGGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCTTGGGCTA
AGAAACTGGCGGAAGCGATTCATCAGGAATTAAAAAGTCTGTATATGGGCAAATCAACGTTTGATACGGAATTTCTCGTG
AAAACCGATCCGTCAGCCAGTGAAGCACCGGTTGTCAACGGGCAGCCCGTGCAGCTTACCCAAAAGGGGATTGACCTTGT
GAAGTTTTTAATTTCAACAAACACCGGTGAGCCTTTAAAACCGCTGTCAAAGGTCGCTTCCGGAGGCGAGCTTTCACGGG
TGATGCTGGCGATGAAGAGTATTTTTTCTTCCCAGCAGGATGTCACCTCCATCATCTTTGACGAAGTGGACACCGGTGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
GCCGCAGGTTGCCGCCATGGCGGATACGCACCTTCTGATCGCAAAAGAATTCAAAGACGGCCGGACGACAACGCATGTCA
CGCCGCTTTCCAAGCAGGATAAGGTAGCGGAAATCGGCCGTATGATTGCGGGTGTTGAAGTGACCGATCTGACAAAACGG
CATGCACAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

88.715

100

0.887