Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   U2H13_RS09015 Genome accession   NZ_CP141181
Coordinates   1840605..1841039 (+) Length   144 a.a.
NCBI ID   WP_021493650.1    Uniprot ID   -
Organism   Bacillus sp. A1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1835605..1846039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2H13_RS09010 (U2H13_08995) - 1839105..1840316 (-) 1212 WP_025649439.1 cytochrome P450 -
  U2H13_RS09015 (U2H13_09000) nucA/comI 1840605..1841039 (+) 435 WP_021493650.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  U2H13_RS09020 (U2H13_09005) - 1841099..1841854 (+) 756 WP_095060096.1 YoaK family protein -
  U2H13_RS09025 (U2H13_09010) - 1841888..1842250 (-) 363 WP_007410383.1 hypothetical protein -
  U2H13_RS09030 (U2H13_09015) - 1842442..1843770 (-) 1329 WP_257988732.1 S8 family peptidase -
  U2H13_RS09035 (U2H13_09020) - 1843949..1844182 (+) 234 WP_038461471.1 hypothetical protein -
  U2H13_RS09040 (U2H13_09025) - 1844438..1845145 (+) 708 WP_014417828.1 poly-gamma-glutamate hydrolase family protein -
  U2H13_RS09045 (U2H13_09030) - 1845205..1845657 (+) 453 WP_014305039.1 OsmC family protein -
  U2H13_RS09050 (U2H13_09035) - 1845671..1846024 (-) 354 WP_007410379.1 multidrug efflux SMR transporter -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15480.42 Da        Isoelectric Point: 7.2418

>NTDB_id=916246 U2H13_RS09015 WP_021493650.1 1840605..1841039(+) (nucA/comI) [Bacillus sp. A1]
MNAFMKWAASLLLVISLQVGLTGAGIHSDSAARAASRYDQVLYFPLSKYPETGNHIKDAISAGHSEICTIDRGGAENRRK
ESLKGIPTKPGFDRDEWPMAVCTEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 435 bp        

>NTDB_id=916246 U2H13_RS09015 WP_021493650.1 1840605..1841039(+) (nucA/comI) [Bacillus sp. A1]
ATGAATGCGTTTATGAAATGGGCGGCAAGTCTGCTTTTGGTGATCTCTCTTCAGGTCGGCCTTACGGGCGCCGGCATCCA
TTCGGACAGTGCTGCTCGTGCCGCATCCCGATACGATCAGGTGCTGTATTTCCCGCTGTCAAAATATCCGGAGACGGGAA
ATCATATAAAAGACGCCATTTCGGCAGGTCATTCTGAGATTTGTACAATTGATCGGGGCGGAGCGGAGAATAGAAGGAAA
GAATCATTGAAAGGAATTCCGACAAAGCCCGGGTTTGACCGTGATGAATGGCCCATGGCAGTCTGCACAGAAGGCGGGGC
GGGGGCTGATATCAGATATGTAACCCCGTCGGATAACCGCGGGGCCGGTTCATGGGTTGGAAATCAAATGAGCGGATACT
CCGACGGCACGAGAGTACTATTTATCGTTCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

56.452

86.111

0.486