Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   U2H13_RS07585 Genome accession   NZ_CP141181
Coordinates   1445821..1446105 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus sp. A1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1440821..1451105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2H13_RS07565 (U2H13_07550) - 1442065..1442973 (+) 909 WP_376700756.1 ketopantoate reductase family protein -
  U2H13_RS07570 (U2H13_07555) - 1443004..1444236 (-) 1233 WP_007409644.1 aminopeptidase -
  U2H13_RS07575 (U2H13_07560) - 1444337..1444471 (-) 135 WP_003154559.1 protein YkpC -
  U2H13_RS07580 (U2H13_07565) mreBH 1444543..1445550 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  U2H13_RS07585 (U2H13_07570) abrB 1445821..1446105 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  U2H13_RS07590 (U2H13_07575) - 1446278..1447582 (+) 1305 WP_014417634.1 ATP-binding protein -
  U2H13_RS07595 (U2H13_07580) - 1447584..1448411 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase -
  U2H13_RS07600 (U2H13_07585) ktrC 1448452..1449117 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  U2H13_RS07605 (U2H13_07590) ade 1449266..1450999 (+) 1734 WP_053285007.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=916241 U2H13_RS07585 WP_024085249.1 1445821..1446105(+) (abrB) [Bacillus sp. A1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=916241 U2H13_RS07585 WP_024085249.1 1445821..1446105(+) (abrB) [Bacillus sp. A1]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543