Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxS   Type   Regulator
Locus tag   OCU36_RS13930 Genome accession   NZ_AP025458
Coordinates   3066296..3066814 (+) Length   172 a.a.
NCBI ID   WP_261838463.1    Uniprot ID   -
Organism   Vibrio artabrorum strain CECT 7226     
Function   induction of competence (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3062231..3073773 3066296..3066814 within 0
IS/Tn 3066934..3067854 3066296..3066814 flank 120


Gene organization within MGE regions


Location: 3062231..3073773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU36_RS13910 cfa 3062394..3063542 (-) 1149 WP_261838460.1 cyclopropane fatty acyl phospholipid synthase -
  OCU36_RS13915 - 3063639..3064532 (+) 894 WP_261838461.1 DMT family transporter -
  OCU36_RS13920 metK 3064676..3065830 (+) 1155 WP_261838462.1 methionine adenosyltransferase -
  OCU36_RS13925 - 3066068..3066214 (+) 147 Protein_2638 hypothetical protein -
  OCU36_RS13930 luxS 3066296..3066814 (+) 519 WP_261838463.1 S-ribosylhomocysteine lyase Regulator
  OCU36_RS13935 - 3066934..3067854 (+) 921 WP_261838464.1 IS5 family transposase -
  OCU36_RS13940 - 3068231..3068635 (-) 405 WP_224067512.1 hypothetical protein -
  OCU36_RS13945 - 3068628..3070685 (-) 2058 WP_261838465.1 hypothetical protein -
  OCU36_RS13950 - 3070678..3073773 (-) 3096 WP_261838466.1 hypothetical protein -

Sequence


Protein


Download         Length: 172 a.a.        Molecular weight: 19041.80 Da        Isoelectric Point: 4.8563

>NTDB_id=91624 OCU36_RS13930 WP_261838463.1 3066296..3066814(+) (luxS) [Vibrio artabrorum strain CECT 7226]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLSGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDILKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=91624 OCU36_RS13930 WP_261838463.1 3066296..3066814(+) (luxS) [Vibrio artabrorum strain CECT 7226]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCTCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGATACCATCACAGTATTTGACTTACGTTTTACGGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACGTTAGAGCACTTGTACGCTGGCTTTATGCGCAACCACTTAAGCGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGTTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACATATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCAGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTGCGTATTGACTAA

Domains


Predicted by InterproScan.

(4-153)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.795

99.419

0.843


Multiple sequence alignment