Detailed information
Overview
| Name | luxS | Type | Regulator |
| Locus tag | OCU36_RS13930 | Genome accession | NZ_AP025458 |
| Coordinates | 3066296..3066814 (+) | Length | 172 a.a. |
| NCBI ID | WP_261838463.1 | Uniprot ID | - |
| Organism | Vibrio artabrorum strain CECT 7226 | ||
| Function | induction of competence (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 3062231..3073773 | 3066296..3066814 | within | 0 |
| IS/Tn | 3066934..3067854 | 3066296..3066814 | flank | 120 |
Gene organization within MGE regions
Location: 3062231..3073773
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCU36_RS13910 | cfa | 3062394..3063542 (-) | 1149 | WP_261838460.1 | cyclopropane fatty acyl phospholipid synthase | - |
| OCU36_RS13915 | - | 3063639..3064532 (+) | 894 | WP_261838461.1 | DMT family transporter | - |
| OCU36_RS13920 | metK | 3064676..3065830 (+) | 1155 | WP_261838462.1 | methionine adenosyltransferase | - |
| OCU36_RS13925 | - | 3066068..3066214 (+) | 147 | Protein_2638 | hypothetical protein | - |
| OCU36_RS13930 | luxS | 3066296..3066814 (+) | 519 | WP_261838463.1 | S-ribosylhomocysteine lyase | Regulator |
| OCU36_RS13935 | - | 3066934..3067854 (+) | 921 | WP_261838464.1 | IS5 family transposase | - |
| OCU36_RS13940 | - | 3068231..3068635 (-) | 405 | WP_224067512.1 | hypothetical protein | - |
| OCU36_RS13945 | - | 3068628..3070685 (-) | 2058 | WP_261838465.1 | hypothetical protein | - |
| OCU36_RS13950 | - | 3070678..3073773 (-) | 3096 | WP_261838466.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19041.80 Da Isoelectric Point: 4.8563
>NTDB_id=91624 OCU36_RS13930 WP_261838463.1 3066296..3066814(+) (luxS) [Vibrio artabrorum strain CECT 7226]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLSGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDILKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLSGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDILKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID
Nucleotide
Download Length: 519 bp
>NTDB_id=91624 OCU36_RS13930 WP_261838463.1 3066296..3066814(+) (luxS) [Vibrio artabrorum strain CECT 7226]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCTCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGATACCATCACAGTATTTGACTTACGTTTTACGGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACGTTAGAGCACTTGTACGCTGGCTTTATGCGCAACCACTTAAGCGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGTTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACATATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCAGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTGCGTATTGACTAA
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCTCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGATACCATCACAGTATTTGACTTACGTTTTACGGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACGTTAGAGCACTTGTACGCTGGCTTTATGCGCAACCACTTAAGCGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGTTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACATATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCAGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTGCGTATTGACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| luxS | Vibrio cholerae strain A1552 |
84.795 |
99.419 |
0.843 |