Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   U2H13_RS07375 Genome accession   NZ_CP141181
Coordinates   1409460..1409924 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus sp. A1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1404460..1414924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2H13_RS07355 (U2H13_07340) - 1404941..1406761 (+) 1821 WP_021493759.1 PAS domain-containing protein -
  U2H13_RS07360 (U2H13_07345) - 1406742..1407955 (-) 1214 Protein_1391 aminotransferase A -
  U2H13_RS07365 (U2H13_07350) - 1408156..1408317 (-) 162 WP_007409608.1 hypothetical protein -
  U2H13_RS07370 (U2H13_07355) cheV 1408506..1409417 (+) 912 WP_014417604.1 chemotaxis protein CheV -
  U2H13_RS07375 (U2H13_07360) kre 1409460..1409924 (-) 465 WP_003154622.1 YkyB family protein Regulator
  U2H13_RS07380 (U2H13_07365) - 1410047..1411339 (-) 1293 WP_014417606.1 MFS transporter -
  U2H13_RS07385 (U2H13_07370) - 1411415..1411909 (-) 495 WP_089072484.1 L,D-transpeptidase family protein -
  U2H13_RS07390 (U2H13_07375) - 1411984..1412847 (-) 864 WP_121984218.1 metallophosphoesterase -
  U2H13_RS07395 (U2H13_07380) fadH 1412991..1413755 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  U2H13_RS07400 (U2H13_07385) - 1413869..1414417 (+) 549 WP_021493756.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=916239 U2H13_RS07375 WP_003154622.1 1409460..1409924(-) (kre) [Bacillus sp. A1]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=916239 U2H13_RS07375 WP_003154622.1 1409460..1409924(-) (kre) [Bacillus sp. A1]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCTGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929