Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   U2H13_RS01865 Genome accession   NZ_CP141181
Coordinates   347461..347859 (-) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus sp. A1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 342461..352859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2H13_RS01840 (U2H13_01840) - 342633..343835 (+) 1203 WP_014416870.1 GTP-binding protein -
  U2H13_RS01845 (U2H13_01845) - 343900..345036 (+) 1137 WP_094296367.1 zinc-dependent alcohol dehydrogenase -
  U2H13_RS01850 (U2H13_01850) - 345051..345485 (+) 435 WP_014416871.1 RDD family protein -
  U2H13_RS01855 (U2H13_01855) - 345602..345880 (+) 279 WP_263612330.1 YckD family protein -
  U2H13_RS01860 (U2H13_01860) - 345984..347420 (+) 1437 WP_072177592.1 glycoside hydrolase family 1 protein -
  U2H13_RS01865 (U2H13_01865) nin/comJ 347461..347859 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  U2H13_RS01870 (U2H13_01870) nucA/comI 347880..348317 (-) 438 WP_103527166.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  U2H13_RS01875 (U2H13_01875) hxlB 348648..349205 (-) 558 WP_103527165.1 6-phospho-3-hexuloisomerase -
  U2H13_RS01880 (U2H13_01880) hxlA 349202..349837 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  U2H13_RS01885 (U2H13_01885) - 350069..350431 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=916217 U2H13_RS01865 WP_007609299.1 347461..347859(-) (nin/comJ) [Bacillus sp. A1]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=916217 U2H13_RS01865 WP_007609299.1 347461..347859(-) (nin/comJ) [Bacillus sp. A1]
TTGATTAAATCATGGAAACCGCAAGAACTAGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCTATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758