Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OCU36_RS12660 Genome accession   NZ_AP025458
Coordinates   2788944..2789948 (+) Length   334 a.a.
NCBI ID   WP_261838282.1    Uniprot ID   -
Organism   Vibrio artabrorum strain CECT 7226     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2783944..2794948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU36_RS12645 - 2784317..2785606 (-) 1290 WP_261838280.1 malic enzyme-like NAD(P)-binding protein -
  OCU36_RS12650 rpmE 2785940..2786158 (-) 219 WP_004737142.1 50S ribosomal protein L31 -
  OCU36_RS12655 priA 2786502..2788703 (+) 2202 WP_261838281.1 primosomal protein N' -
  OCU36_RS12660 cytR 2788944..2789948 (+) 1005 WP_261838282.1 DNA-binding transcriptional regulator CytR Regulator
  OCU36_RS12665 - 2790071..2790610 (+) 540 WP_261838283.1 SPOR domain-containing protein -
  OCU36_RS12670 hslV 2790828..2791376 (+) 549 WP_076656768.1 ATP-dependent protease subunit HslV -
  OCU36_RS12675 hslU 2791435..2792775 (+) 1341 WP_261838284.1 HslU--HslV peptidase ATPase subunit -
  OCU36_RS12680 - 2792932..2793849 (+) 918 WP_261838285.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  OCU36_RS12685 rraA 2793923..2794438 (+) 516 WP_261838286.1 ribonuclease E activity regulator RraA -
  OCU36_RS12690 zapB 2794531..2794773 (-) 243 WP_261838287.1 cell division protein ZapB -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36564.06 Da        Isoelectric Point: 6.6375

>NTDB_id=91621 OCU36_RS12660 WP_261838282.1 2788944..2789948(+) (cytR) [Vibrio artabrorum strain CECT 7226]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKSEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGISMNPAYSTIGDFSFDAGAQAVRHLLALPEQPTA
IFCHNDAMAIGAIQEAKRLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLKGNDVQAGSRLLE
AKLVVRGTTAPPRL

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=91621 OCU36_RS12660 WP_261838282.1 2788944..2789948(+) (cytR) [Vibrio artabrorum strain CECT 7226]
ATGGCGACAATGAAGGATGTTGCCCAGTTAGCAGGCGTCTCAACAGCCACGGTATCACGTGCATTGATGAATCCTGAGAA
GGTCTCCGTGTCTACTCGTAAACGAGTCGAGACAGCAGTGCTTGAAGCTGGATACTCCCCCAACACATTAGCTAGAAACT
TACGTCGCAACGAATCAAAAACCATCATCACTATCGTTCCTGATATCTGTGACCCTTATTTCGCCGAGATCATTCGTGGT
ATTGAAGATGCCGCAGTAGAAAATGACTACCTTGTTCTGCTTGGTGATAGCGGCCAACAAAAAAAGCGCGAATCCTCATT
TGTTAACTTAGTCTTTACCAAGCAAGCCGATGGTATGTTATTACTTGGCACTGATCACCCATTTGATGTCAGTAAGTCTG
AACAAAAAAACTTACCCCCGATGGTAATGGCGTGTGAATTCGCCCCTGAACTTGAACTCCCCACCGTGCACATCGATAAC
CTAACGTCTGCATTTGAAGCCGTAAACTACCTCGCTCAGCTCGGTCATAAACGTATTGCTCAAATCTCTGGACCAGTATC
GGCAACGCTATGCAAATTCCGTCAACAAGGTTACCAACAGGCACTGCGTCGAGCTGGGATATCAATGAACCCAGCATACA
GCACCATTGGTGACTTTTCCTTTGACGCTGGCGCTCAAGCGGTTCGTCATTTACTGGCACTGCCAGAGCAACCCACCGCC
ATTTTCTGTCACAACGATGCGATGGCGATCGGGGCCATTCAAGAAGCAAAAAGGTTAGGTTTACGTGTTCCTCAAGACCT
CTCCATTGTTGGCTTCGATGACATCCAATTTGCTCAATACTGCGATCCACCGTTAACCACGATTTCTCAACCTCGTTATG
AAATTGGACGCCAAGCGATGTTAATGATGTTGGATCTACTGAAAGGCAATGATGTACAAGCGGGTTCTCGTCTACTTGAA
GCAAAATTGGTCGTTCGAGGCACGACGGCACCACCACGACTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

88.589

99.701

0.883
  cytR Vibrio cholerae C6706

88.855

99.401

0.883

Multiple sequence alignment