Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   T3H97_RS22085 Genome accession   NZ_CP141152
Coordinates   4902659..4903612 (-) Length   317 a.a.
NCBI ID   WP_129550005.1    Uniprot ID   -
Organism   Paenibacillus sp. LX16     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4897659..4908612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T3H97_RS22060 (T3H97_22060) - 4898122..4899033 (-) 912 WP_328800882.1 aldo/keto reductase -
  T3H97_RS22065 (T3H97_22065) - 4899197..4899940 (-) 744 WP_328800883.1 alpha/beta hydrolase-fold protein -
  T3H97_RS22070 (T3H97_22070) - 4899974..4900954 (-) 981 WP_328800884.1 siderophore ABC transporter substrate-binding protein -
  T3H97_RS22075 (T3H97_22075) - 4900967..4901725 (-) 759 WP_328800885.1 ABC transporter ATP-binding protein -
  T3H97_RS22080 (T3H97_22080) - 4901719..4902669 (-) 951 WP_328800886.1 iron chelate uptake ABC transporter family permease subunit -
  T3H97_RS22085 (T3H97_22085) ceuB 4902659..4903612 (-) 954 WP_129550005.1 ABC transporter permease Machinery gene
  T3H97_RS22090 (T3H97_22090) - 4903936..4904064 (-) 129 WP_328800887.1 hypothetical protein -
  T3H97_RS22095 (T3H97_22095) - 4904373..4905050 (+) 678 WP_328802868.1 response regulator transcription factor -
  T3H97_RS22100 (T3H97_22100) - 4905047..4905964 (+) 918 WP_328802869.1 HAMP domain-containing sensor histidine kinase -
  T3H97_RS22105 (T3H97_22105) - 4906645..4906773 (-) 129 WP_328800888.1 hypothetical protein -
  T3H97_RS22110 (T3H97_22110) - 4907028..4907156 (-) 129 WP_328800889.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34746.75 Da        Isoelectric Point: 9.9012

>NTDB_id=916196 T3H97_RS22085 WP_129550005.1 4902659..4903612(-) (ceuB) [Paenibacillus sp. LX16]
MKLRYLILAFLVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=916196 T3H97_RS22085 WP_129550005.1 4902659..4903612(-) (ceuB) [Paenibacillus sp. LX16]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTGGTACTGGCTTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGTTTGATCAGCATCATTA
TCGCAGGGGCGAGTATGAGCATCTGTGGGCTCATTATGCAGCAGCTTACCCGGAACCGATTTGTATCGCCCACCACTGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAAATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCATTGGCGTACATATATGCGAATCGTTTCACAATTGCAGGAATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTATCCTCTGTTGTCATCTTAACCGTTGGGACG
ATTCCCTTTTTAGGGCTGGTTGTACCCAATCTAGTCAGCATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGACATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508