Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   T3H97_RS12315 Genome accession   NZ_CP141152
Coordinates   2754879..2756729 (+) Length   616 a.a.
NCBI ID   WP_103048527.1    Uniprot ID   -
Organism   Paenibacillus sp. LX16     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2749879..2761729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T3H97_RS12295 (T3H97_12295) - 2749946..2750590 (+) 645 WP_328802697.1 SDR family oxidoreductase -
  T3H97_RS12300 (T3H97_12300) - 2750778..2751800 (+) 1023 WP_328802698.1 NADH:flavin oxidoreductase/NADH oxidase -
  T3H97_RS12305 (T3H97_12305) - 2752638..2753048 (+) 411 WP_013310356.1 MarR family transcriptional regulator -
  T3H97_RS12310 (T3H97_12310) rcrP 2753123..2754886 (+) 1764 WP_328802699.1 ABC transporter ATP-binding protein Regulator
  T3H97_RS12315 (T3H97_12315) rcrQ 2754879..2756729 (+) 1851 WP_103048527.1 ABC transporter ATP-binding protein Regulator
  T3H97_RS12320 (T3H97_12320) - 2756850..2757158 (+) 309 WP_025723019.1 hypothetical protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67874.38 Da        Isoelectric Point: 6.1585

>NTDB_id=916185 T3H97_RS12315 WP_103048527.1 2754879..2756729(+) (rcrQ) [Paenibacillus sp. LX16]
MDKNEHTVDSQQMKMNQRGPMGKGPAGGSGAGEKANNFKKTISQLVSYSKAYVPMIILAMVLGLVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIIATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTIKLDTAKGDVEFKHVRFGYNTDRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAASRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=916185 T3H97_RS12315 WP_103048527.1 2754879..2756729(+) (rcrQ) [Paenibacillus sp. LX16]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGCGAGGTCCCATGGGTAAAGGACCCGCGGG
GGGCAGTGGTGCTGGTGAAAAAGCGAATAATTTTAAAAAGACCATTAGCCAGCTTGTATCCTACAGCAAGGCCTATGTGC
CTATGATTATACTCGCTATGGTACTGGGCCTGGTCGGCTCTACCCTCAACGTGATTGGCCCCGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCGTAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTATTGGCGCTTTT
ATATGGATTTGGTCTTATTTTTAACTATTTCCAGGGCTTCATTACGGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCTCGAAAAATCGATCATATGCCTTTGAAATATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGT
GTAACCAACGATGTCGATACCATTGGACAAACTTTAAACAACAGTCTCGGCACGCTTGTCAGTGCGCTGGCTACCTTCGT
GGGCGCCTTGATTATGATGCTTTATACGAACTGGATTATGACCGTTACCGGAATTATAGCTACGCTGATCGGCTTTTGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGTATTAA
CAGCCGCTTATATACAAATGCATGGAAGTCCCAATTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTATGTCGCGGTCTGTGTTGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACTATCGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCCGCAACCAATCTGCAGTCGGCGGCTGCCGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCATAAAGCTGGACACCGCCA
AAGGGGATGTCGAATTCAAACATGTCCGTTTCGGCTATAATACAGATCGTATGATTATCAAGGACTTCTCCATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTTGGTCCGACAGGTGCTGGTAAGACCACGCTCGTGAATTTGCTCATGCGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACCCCGATCAGCCAATTAACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACCGAT
GAGCAGGTGGAAGCTGCTAGTAGAGCGGTGGGGCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGTGCT
GGACGACAAAGCCAATCTCTCCGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCGATGATTGAAGATTCACCCATGC
TCATTCTGGATGAGGCCACAAGCTCGGTCGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGACGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGTTGGCTAAAGGCGGCTTCTATGCCGATCTATACAACAGTCAGTTTGAAC
ATGCATCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(57-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.499

93.669

0.529