Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   T3H97_RS12310 Genome accession   NZ_CP141152
Coordinates   2753123..2754886 (+) Length   587 a.a.
NCBI ID   WP_328802699.1    Uniprot ID   -
Organism   Paenibacillus sp. LX16     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2748123..2759886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T3H97_RS12290 (T3H97_12290) - 2748768..2749640 (+) 873 WP_274485627.1 LysR family transcriptional regulator -
  T3H97_RS12295 (T3H97_12295) - 2749946..2750590 (+) 645 WP_328802697.1 SDR family oxidoreductase -
  T3H97_RS12300 (T3H97_12300) - 2750778..2751800 (+) 1023 WP_328802698.1 NADH:flavin oxidoreductase/NADH oxidase -
  T3H97_RS12305 (T3H97_12305) - 2752638..2753048 (+) 411 WP_013310356.1 MarR family transcriptional regulator -
  T3H97_RS12310 (T3H97_12310) rcrP 2753123..2754886 (+) 1764 WP_328802699.1 ABC transporter ATP-binding protein Regulator
  T3H97_RS12315 (T3H97_12315) rcrQ 2754879..2756729 (+) 1851 WP_103048527.1 ABC transporter ATP-binding protein Regulator
  T3H97_RS12320 (T3H97_12320) - 2756850..2757158 (+) 309 WP_025723019.1 hypothetical protein -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64862.22 Da        Isoelectric Point: 8.0886

>NTDB_id=916184 T3H97_RS12310 WP_328802699.1 2753123..2754886(+) (rcrP) [Paenibacillus sp. LX16]
MLKIFKYLKKNEWMLVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPVSELLIPGSYMLLCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNNFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGAAVAALILMLSVIVVFALPSFQRIQRLTDNLNRVTREHLIGLRVVRAYNADQYQQEKFEQANVELTNTNLFANRLMTM
IGPGMTFIMSGLSVSIYCIGAYLINGAAVPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFILMPRASISAKRIMEVLNTE
SSIVNGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKRGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRNYNQQALHNKIGYVPQRAVLFNGTVVSNVSYGDNRRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=916184 T3H97_RS12310 WP_328802699.1 2753123..2754886(+) (rcrP) [Paenibacillus sp. LX16]
ATGCTAAAGATATTCAAATATCTCAAGAAAAATGAATGGATGCTCGTGCTTTGCAGCTTAGCTTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTGCCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACGGAAGGAACGCCTGTGTCCGAAC
TGCTGATTCCCGGCAGTTACATGTTGCTTTGTGCCGTCGGTAGTATGATTGCATCTATTATTGTGGGCTACTTCGCGGCA
AAGGTGGCTGCAGGGCTGGCTATGCGTCTGCGTGCGATGGTCTTTGACAAGACCTTATCCTTTTCGATGGAAGAGATGAA
CAACTTTTCGACGGCAAGCCTCATTACCCGCTCCACGAACGATGTTACACAGATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCACCGATTCTAGCCGTATGGGCCATTGTGAAGATTGCGGATAAAAACTGGCAGTGGACCGCCTCC
ACAGGAGCGGCCGTAGCTGCTCTGATTCTAATGCTAAGTGTCATTGTTGTTTTCGCTCTTCCAAGTTTCCAGAGAATCCA
GCGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGATCGGACTTCGGGTAGTACGCGCTTATAATGCAGATC
AGTATCAGCAGGAGAAGTTCGAGCAGGCTAACGTTGAGTTGACGAATACAAACCTGTTTGCAAACCGATTAATGACGATG
ATTGGCCCAGGTATGACCTTTATTATGTCAGGTCTGAGCGTCTCTATCTATTGTATCGGCGCTTACCTGATTAACGGGGC
GGCCGTACCAGACCGTATCACGTTGTTCTCCAATATGGTCGTATTCTCCTCTTATGCAATGCAGGTGGTTATGGCCTTTA
TGATGGTAAGTATGATATTCATTCTGATGCCTCGCGCCTCGATTTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGCATCGTTAACGGGCATGAGACGACTGGAGAAGAGAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGACGCGGAGGAGGCCGTGCTTCGCAACATTAGCTTTACGGCGAAACGAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGCGGCAAAACCAGCGTGATCAATCTGATTCCCCGTTTCTATGATGTGACCGAGGGAGAGGTACTCGTGGAT
GGTGTGAATGTCAGGAACTATAATCAGCAGGCACTCCATAACAAAATCGGGTATGTCCCCCAGAGAGCTGTACTGTTCAA
CGGTACGGTGGTATCCAACGTTTCGTATGGCGATAACAGAAGAGCAGGAGCTTCGGAGAAACTCGTTAAAGAGGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTCGAAAAAATGGATGGTCAATATCAGGGTAGAATTTCGCAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGGCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAAATTTATATTTTCGATGATTCCTT
CTCGGCATTAGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGCCACGCTACGACACTTATCG
TTGGTCAGCGCATAGGTACTATCAAAGACGCTGATCGGATTATCGTGCTGGACCAGGGAGAGATTGTAGGGAGCGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAGATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.421

100

0.535