Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OCU36_RS11410 Genome accession   NZ_AP025458
Coordinates   2559903..2560883 (-) Length   326 a.a.
NCBI ID   WP_261838102.1    Uniprot ID   -
Organism   Vibrio artabrorum strain CECT 7226     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2554903..2565883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU36_RS11400 - 2555659..2556993 (-) 1335 WP_261838101.1 site-specific integrase -
  OCU36_RS11405 mutS 2557168..2559753 (+) 2586 WP_390207001.1 DNA mismatch repair protein MutS -
  OCU36_RS11410 rpoS 2559903..2560883 (-) 981 WP_261838102.1 RNA polymerase sigma factor RpoS Regulator
  OCU36_RS11415 nlpD 2560982..2561884 (-) 903 WP_261838103.1 murein hydrolase activator NlpD -
  OCU36_RS11420 - 2561919..2562545 (-) 627 WP_261838104.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OCU36_RS11425 surE 2562546..2563289 (-) 744 WP_261838105.1 5'/3'-nucleotidase SurE -
  OCU36_RS11430 truD 2563366..2564412 (-) 1047 WP_261838106.1 tRNA pseudouridine(13) synthase TruD -
  OCU36_RS11435 ispF 2564435..2564914 (-) 480 WP_261838107.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OCU36_RS11440 ispD 2564917..2565618 (-) 702 WP_261838108.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37220.49 Da        Isoelectric Point: 5.6612

>NTDB_id=91611 OCU36_RS11410 WP_261838102.1 2559903..2560883(-) (rpoS) [Vibrio artabrorum strain CECT 7226]
MSISNAVTKQEFDLDQATTEPAKLGKAKRTVTKKTEAKEDAEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIAFKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDVNNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=91611 OCU36_RS11410 WP_261838102.1 2559903..2560883(-) (rpoS) [Vibrio artabrorum strain CECT 7226]
ATGAGTATAAGCAATGCAGTAACCAAACAAGAGTTTGACCTTGACCAAGCAACCACGGAACCGGCAAAACTTGGGAAAGC
CAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGACGCTGAAGTTACGTCTAAAAGTTTAGATGCCACTCAACTCT
ACTTAGGCGAAATCGGTTTCTCACCACTGCTAACCGCTGAAGAAGAAGTGCTTTATGCACGTAGAGCTTTACGCGGTGAT
GAAGCCGCACGTAAACGCATGATCGAAAGTAATCTGCGTTTGGTAGTCAAAATTTCACGCCGTTATAGTAACCGAGGCCT
TGCACTTCTTGATCTTATTGAAGAAGGTAACTTAGGTTTAATTCGCGCCGTTGAGAAATTTGATCCTGAGCGTGGCTTCC
GCTTTTCGACTTACGCGACATGGTGGATCCGTCAAACCATCGAACGTGCTTTAATGAATCAGACTCGCACTATCCGTTTA
CCAATCCATGTTGTGAAAGAGCTGAACATTTACTTGCGTACCGCAAGAGAGTTATCTCAAAAACTTGACCATGAACCAAC
CGCTGAAGAGATCGCTTTTAAACTGGATAAGCCGGTGGGTGATGTCAGTAAGATGCTCCGTTTAAACGAAAGAGTGAGCT
CTGTAGATACGCCAATTGGTGGTGATGGTGAGAAAGCGCTACTCGATATTATTCCAGACGTTAACAACTCTGATCCTGAG
GTTTCTACTCAAGATAGCGATATTAAAAATTCGTTGATTTTTTGGCTTGATGAGCTTAACCCTAAGCAGAAAGAGGTGCT
TGCACGTCGCTTTGGATTACTGGGCTATGAGCCATCAACATTAGAAGAAGTTGGTCGTGAAATCAGCCTGACTCGCGAAC
GTGTTCGTCAAATCCAAGTCGAAGGTCTGCGTCGCCTACGTGAGATTTTAATCAAGCAAGGTCTGAATATGGAAAATCTG
TTCAACGTAGAAAATGACTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70, region 4 (Sigma70_r4)

(255-308)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70 region 3 (Sigma70_r3)

(167-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.138

100

0.831

Multiple sequence alignment