Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCU36_RS11135 Genome accession   NZ_AP025458
Coordinates   2503867..2504385 (-) Length   172 a.a.
NCBI ID   WP_261838072.1    Uniprot ID   -
Organism   Vibrio artabrorum strain CECT 7226     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2498867..2509385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU36_RS11110 rimM 2498910..2499464 (-) 555 WP_261838069.1 ribosome maturation factor RimM -
  OCU36_RS11115 rpsP 2499488..2499736 (-) 249 WP_021705764.1 30S ribosomal protein S16 -
  OCU36_RS11120 ffh 2499949..2501343 (-) 1395 WP_261838070.1 signal recognition particle protein -
  OCU36_RS11125 - 2501544..2502338 (+) 795 WP_261839729.1 inner membrane protein YpjD -
  OCU36_RS11130 - 2502466..2503737 (+) 1272 WP_261838071.1 HlyC/CorC family transporter -
  OCU36_RS11135 luxS 2503867..2504385 (-) 519 WP_261838072.1 S-ribosylhomocysteine lyase Regulator
  OCU36_RS11140 - 2504410..2505051 (-) 642 WP_261838073.1 hypothetical protein -
  OCU36_RS11145 gshA 2505062..2506630 (-) 1569 WP_261838074.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18858.59 Da        Isoelectric Point: 4.6799

>NTDB_id=91608 OCU36_RS11135 WP_261838072.1 2503867..2504385(-) (luxS) [Vibrio artabrorum strain CECT 7226]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGSDVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKGIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=91608 OCU36_RS11135 WP_261838072.1 2503867..2504385(-) (luxS) [Vibrio artabrorum strain CECT 7226]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACACGCATGAATGCACCCGCAGTTCGTGTTGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACGGTATTTGACCTACGCTTCACCGCACCAAACAAAGATATCCTGTCTGAGAAAGGTATCC
ATACTTTAGAGCACCTATACGCTGGGTTCATGCGAGCTCATCTGAATGGTTCAGATGTTGAGATCATCGACATTTCACCA
ATGGGTTGTCGCACCGGTTTCTACATGAGCTTAATCGGCACACCTTCAGAGCAGCAAGTGGCTGATGCTTGGTTAGCGGC
AATGCAAGATGTACTGAAGGTTGAGAATCAGAATAAGATTCCTGAGCTGAATGAGTACCAATGTGGTACTGCCGCGATGC
ACTCTTTGGATGAAGCGAAAGGCATCGCGAATGCGATCATCGCTGCCGGTATTTCGGTAAACAAAAATGATGAATTGGCA
CTGCCAGAGTCAATGTTACAAGAGCTTAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89

Multiple sequence alignment