Detailed information NTG0916076

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABWQ10_RS05070
• Genome accession: NZ_CP159917
• Coordinates: 756909..757901 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC554
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 751909..762901

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABWQ10_RS05050 (ABWQ10_05050)	otnK	752684..753946 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
ABWQ10_RS05055 (ABWQ10_05055)	ygbL	753943..754581 (+)	639	WP_001278994.1	aldolase	-
ABWQ10_RS05060 (ABWQ10_05060)	ygbM	754586..755362 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ABWQ10_RS05065 (ABWQ10_05065)	ygbN	755451..756815 (+)	1365	WP_001402448.1	GntP family transporter	-
ABWQ10_RS05070 (ABWQ10_05070)	rpoS	756909..757901 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABWQ10_RS05075 (ABWQ10_05075)	nlpD	757964..759058 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABWQ10_RS05080 (ABWQ10_05080)	pcm	759243..759869 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABWQ10_RS05085 (ABWQ10_05085)	surE	759863..760624 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABWQ10_RS05090 (ABWQ10_05090)	truD	760605..761654 (-)	1050	WP_000568926.1	tRNA pseudouridine(13) synthase TruD	-
ABWQ10_RS05095 (ABWQ10_05095)	ispF	761651..762130 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABWQ10_RS05100 (ABWQ10_05100)	ispD	762130..762840 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=916076 ABWQ10_RS05070 WP_000081550.1 756909..757901(-) (rpoS) [Escherichia coli strain EC554]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=916076 ABWQ10_RS05070 WP_000081550.1 756909..757901(-) (rpoS) [Escherichia coli strain EC554]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715