Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ABXV02_RS15250 Genome accession   NZ_CP159912
Coordinates   2917972..2919108 (-) Length   378 a.a.
NCBI ID   WP_010886491.1    Uniprot ID   Q00828
Organism   Bacillus subtilis strain PY79     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2912972..2924108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS15210 xre 2913304..2913645 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  ABXV02_RS15215 xkdA 2913808..2914404 (+) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  ABXV02_RS15220 xpdC 2914448..2915284 (-) 837 WP_003245071.1 manganese catalase family protein -
  ABXV02_RS15225 pghB 2915361..2915963 (-) 603 WP_003244789.1 poly-gamma-glutamate hydrolase family protein -
  ABXV02_RS15230 yjqA 2916069..2916446 (+) 378 WP_003245254.1 PH domain-containing protein -
  ABXV02_RS15235 xlyB 2916486..2917439 (-) 954 WP_003244876.1 N-acetylmuramoyl-L-alanine amidase -
  ABXV02_RS15240 yjpA 2917560..2917817 (+) 258 WP_003232731.1 YciI family protein -
  ABXV02_RS15245 phrA 2917848..2917982 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  ABXV02_RS15250 rapC 2917972..2919108 (-) 1137 WP_010886491.1 response regulator aspartate phosphatase RapA Regulator
  ABXV02_RS15255 yjoB 2919253..2920524 (-) 1272 WP_003245490.1 ATPase YjoB -
  ABXV02_RS15260 bstD 2920673..2921137 (+) 465 WP_003245144.1 DinB family protein -
  ABXV02_RS15265 yjnA 2921362..2922126 (+) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  ABXV02_RS15270 uxaA 2922165..2923658 (-) 1494 WP_003245409.1 UxaA family hydrolase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44974.16 Da        Isoelectric Point: 4.7611

>NTDB_id=916015 ABXV02_RS15250 WP_010886491.1 2917972..2919108(-) (rapC) [Bacillus subtilis strain PY79]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFGKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=916015 ABXV02_RS15250 WP_010886491.1 2917972..2919108(-) (rapC) [Bacillus subtilis strain PY79]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGGGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q00828

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.681

99.471

0.444
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418