Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCU36_RS08895 Genome accession   NZ_AP025458
Coordinates   1989398..1990786 (-) Length   462 a.a.
NCBI ID   WP_261837680.1    Uniprot ID   -
Organism   Vibrio artabrorum strain CECT 7226     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1984398..1995786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU36_RS08860 moaE 1984933..1985406 (-) 474 WP_261837674.1 molybdopterin synthase catalytic subunit MoaE -
  OCU36_RS08865 moaD 1985409..1985654 (-) 246 WP_261837675.1 molybdopterin synthase sulfur carrier subunit -
  OCU36_RS08870 moaC 1985651..1986130 (-) 480 WP_261837676.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCU36_RS08875 moaB 1986143..1986655 (-) 513 WP_151417043.1 molybdenum cofactor biosynthesis protein B -
  OCU36_RS08880 moaA 1986742..1987731 (-) 990 WP_261837677.1 GTP 3',8-cyclase MoaA -
  OCU36_RS08885 - 1988068..1988955 (+) 888 WP_261837678.1 YvcK family protein -
  OCU36_RS08890 luxU 1989029..1989373 (-) 345 WP_261837679.1 quorum-sensing phosphorelay protein LuxU -
  OCU36_RS08895 luxO 1989398..1990786 (-) 1389 WP_261837680.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCU36_RS08900 uvrB 1991089..1993119 (-) 2031 WP_261837681.1 excinuclease ABC subunit UvrB -
  OCU36_RS08910 melB 1993874..1995247 (-) 1374 WP_261837682.1 melibiose:sodium transporter MelB -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51722.33 Da        Isoelectric Point: 6.3227

>NTDB_id=91601 OCU36_RS08895 WP_261837680.1 1989398..1990786(-) (luxO) [Vibrio artabrorum strain CECT 7226]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSAEHPGNQNYQGFIGSSQTMQQVYRI
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVHFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIESRL
RTAEKRDEEITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQVWNAKP

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=91601 OCU36_RS08895 WP_261837680.1 1989398..1990786(-) (luxO) [Vibrio artabrorum strain CECT 7226]
ATGCAATCAAAAACACTAGATAACAAATCAAAGTATTTGTTAATGGTGGAGGATACGGCTTCGGTAGCGGCTTTATATCG
CTCGTATCTTACACCGCTTGAAATTGATATTAATATTGTCGGCACAGGTCGTGATGCCATTGAGAGTTTGAATCATCGAA
TTCCCGATCTTATTTTATTGGATCTGCGTTTACCCGATATGACGGGCATGGACGTTCTGTTTGCTGTAAAACAAAAATAC
CCTGAAGTTCCCGTTATTTTCATGACGGCTCACGGCTCTATCGATACGGCCGTAGAAGCAATGCGTCATGGTTCTCAAGA
TTTCCTTATCAAACCGTGTGAAGCCGATCGACTCCGTATTACGGTGAATAATGCGATACGTAAAGCGACTAAATTAAAGA
ACAGCGCAGAACATCCGGGAAATCAAAACTACCAAGGATTCATTGGTAGTAGCCAAACCATGCAGCAGGTTTATCGAATT
ATCGATTCTGCGGCATCGAGTAAAGCGAGTATCTTCATCACAGGTGAAAGCGGCACAGGTAAAGAGGTGTGCGCAGAAGC
TATTCATGCCGCGAGTAAACGTGGTGACAAGCCATTCATTGCGATTAACTGTGCAGCCATTCCGAAAGATCTCATCGAAA
GCGAACTGTTTGGTCACGTAAAAGGGGCTTTCACCGGTGCTGCAACCGATCGTCAAGGTGCGGCGGAACTTGCTGATGGT
GGCACACTGTTCCTCGATGAGTTGTGTGAGATGGATTTGGAGTTGCAAACCAAGCTTTTGCGCTTTATCCAAACCGGTAC
TTTTCAAAAAGTGGGTTCTTCGAAGATGAAGAGTGTGGATGTTCGCTTCGTATGTGCGACTAACCGTGATCCATGGAAAG
AGGTACAAGAAGGCCGTTTTAGAGAAGATTTATACTACCGTTTATATGTGATTCCTTTGCACTTGCCGCCACTGCGTGAG
CGTGGTGAAGATGTTATTGAAATCGCATATTCGCTACTGGGTTACATGTCTGTTGAAGAAGGCAAAGCGTTTGTTCATTT
TGCTCAAGAAGTGCTTGACCGATTCAATCAATACGAGTGGCCAGGTAACGTGCGTCAACTACAAAACGTATTACGCAATG
TAGTGGTGTTAAATAATGGTAAAGAAATTACGCTGAACATGCTTCCACCGCCATTGAATCAGCCGATTGAAAGCCGCTTA
CGAACGGCAGAAAAACGGGATGAAGAGATTACAGTAAAAGATATTTTTCCATTATGGATCACGGAGAAAACAGCTATCGA
ACAGGCCATAAAAGCATGTGATGGTAACATTCCTCGCGCAGCGGGGTTTTTGGATGTCAGCCCATCAACAATATACCGCA
AGTTGCAAGTGTGGAATGCAAAGCCGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.714

96.97

0.831

Multiple sequence alignment