Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ABXV02_RS13865 Genome accession   NZ_CP159912
Coordinates   2666104..2666553 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain PY79     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2661104..2671553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS13835 sepM 2661183..2662208 (-) 1026 WP_003245451.1 protease DdcP Regulator
  ABXV02_RS13840 ylbK 2662210..2662992 (-) 783 WP_003232221.1 patatin family protein -
  ABXV02_RS13845 spoVV 2663173..2664399 (+) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  ABXV02_RS13850 coaD 2664410..2664895 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ABXV02_RS13855 rsmD 2664900..2665454 (-) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ABXV02_RS13860 ylbG 2665777..2666049 (-) 273 WP_009967171.1 YlbG family protein -
  ABXV02_RS13865 ylbF 2666104..2666553 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ABXV02_RS13870 ylbE 2666669..2666908 (-) 240 WP_003232231.1 YlbE-like family protein -
  ABXV02_RS13875 ylbD 2666924..2667322 (-) 399 WP_003232233.1 YlbD family protein -
  ABXV02_RS13880 ylbC 2667554..2668594 (-) 1041 WP_003245434.1 CAP domain-containing protein -
  ABXV02_RS13885 ylbB 2668678..2669124 (-) 447 WP_003221362.1 CBS domain-containing protein -
  ABXV02_RS13890 ylbA 2669264..2669626 (+) 363 WP_003232238.1 YugN family protein -
  ABXV02_RS13895 ctaG 2669658..2670551 (-) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  ABXV02_RS13900 ctaF 2670578..2670910 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ABXV02_RS13905 ctaE 2670913..2671536 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=916005 ABXV02_RS13865 WP_003221370.1 2666104..2666553(-) (ylbF) [Bacillus subtilis strain PY79]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=916005 ABXV02_RS13865 WP_003221370.1 2666104..2666553(-) (ylbF) [Bacillus subtilis strain PY79]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1