Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ABXV02_RS09170 Genome accession   NZ_CP159912
Coordinates   1727360..1727770 (+) Length   136 a.a.
NCBI ID   WP_009967785.1    Uniprot ID   P42983
Organism   Bacillus subtilis strain PY79     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1722360..1732770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS09135 arsR 1722523..1722840 (+) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -
  ABXV02_RS09140 arsK 1722901..1723341 (+) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  ABXV02_RS09145 acr3 1723364..1724404 (+) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  ABXV02_RS09150 arsC 1724416..1724835 (+) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  ABXV02_RS09155 - 1725190..1725368 (+) 179 Protein_1772 hypothetical protein -
  ABXV02_RS09160 spoIVCA 1725326..1726786 (+) 1461 WP_223257626.1 site-specific DNA recombinase SpoIVCA -
  ABXV02_RS09165 - 1726817..1727164 (-) 348 Protein_1774 sigma-70 family RNA polymerase sigma factor -
  ABXV02_RS09170 nucA/comI 1727360..1727770 (+) 411 WP_009967785.1 sporulation-specific Dnase NucB Machinery gene
  ABXV02_RS09175 yqeB 1727803..1728525 (-) 723 WP_010886572.1 hypothetical protein -
  ABXV02_RS09180 gnd 1728777..1729670 (+) 894 WP_003229961.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  ABXV02_RS09185 yqeD 1729689..1730315 (-) 627 WP_003229962.1 TVP38/TMEM64 family protein -
  ABXV02_RS09190 cwlH 1730502..1731254 (+) 753 WP_003229963.1 N-acetylmuramoyl-L-alanine amidase CwlH -
  ABXV02_RS09195 yqeF 1731506..1732237 (+) 732 WP_003229964.1 SGNH/GDSL hydrolase family protein -
  ABXV02_RS09200 - 1732543..1732683 (-) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14967.97 Da        Isoelectric Point: 5.1853

>NTDB_id=915966 ABXV02_RS09170 WP_009967785.1 1727360..1727770(+) (nucA/comI) [Bacillus subtilis strain PY79]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=915966 ABXV02_RS09170 WP_009967785.1 1727360..1727770(+) (nucA/comI) [Bacillus subtilis strain PY79]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG

Domains

Predicted by InterProScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42983

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

62.609

84.559

0.529