Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ABXV02_RS09125 Genome accession   NZ_CP159912
Coordinates   1719817..1720944 (-) Length   375 a.a.
NCBI ID   WP_004398842.1    Uniprot ID   P45943
Organism   Bacillus subtilis strain PY79     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1714817..1725944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS09090 - 1715749..1716228 (+) 480 WP_004399085.1 hypothetical protein -
  ABXV02_RS09095 - 1716244..1716606 (+) 363 WP_003229947.1 hypothetical protein -
  ABXV02_RS09100 - 1716603..1716749 (-) 147 WP_009967791.1 hypothetical protein -
  ABXV02_RS09105 yqcF 1716867..1717445 (-) 579 WP_009967790.1 type VII secretion system immunity protein YqcF -
  ABXV02_RS09110 yqcG 1717460..1719055 (-) 1596 WP_004399034.1 LXG family T7SS effector endonuclease toxin YqcG -
  ABXV02_RS09115 - 1719425..1719583 (-) 159 WP_003245945.1 hypothetical protein -
  ABXV02_RS09120 phrE 1719693..1719827 (-) 135 WP_004398770.1 phosphatase RapE inhibitor PhrE -
  ABXV02_RS09125 rapC 1719817..1720944 (-) 1128 WP_004398842.1 response regulator aspartate phosphatase RapE Regulator
  ABXV02_RS09130 yqcI 1721387..1722151 (+) 765 WP_004398670.1 YqcI/YcgG family protein -
  ABXV02_RS09135 arsR 1722523..1722840 (+) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -
  ABXV02_RS09140 arsK 1722901..1723341 (+) 441 WP_003229954.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  ABXV02_RS09145 acr3 1723364..1724404 (+) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  ABXV02_RS09150 arsC 1724416..1724835 (+) 420 WP_004398596.1 thioredoxin-dependent arsenate reductase -
  ABXV02_RS09155 - 1725190..1725368 (+) 179 Protein_1772 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44636.38 Da        Isoelectric Point: 7.3392

>NTDB_id=915965 ABXV02_RS09125 WP_004398842.1 1719817..1720944(-) (rapC) [Bacillus subtilis strain PY79]
MISITSAEVGMKINEWHRHIQKFNVTDAEMLKAEIERDIEVMEEDQDLLIYYQLMAFRHKIMLEYTLPSDENRMELSEYL
NKIEGHKKKLDNMRAYYYNFFRGMYEFRNGEYTRAITYYKKAERKIPTISDKIEKAEFYFKLSEVYYHMKMTHISMHYAE
LSYNIYKKHELYSVRRIQCHFVIAGNYDDLENHEKALPHLQEALKGAELLKSKNTHIYATAFFNLGNCYHKMDNLNKAAR
YIEQALVQYRKINSDVLPQAYHDLALIYFKQGKKEQAMDCFRKGIRSAVDFKDELFMNLFEALDVLYIRNGDTPKLLNIF
SRLENGKGYPYLEELALLGGNLFDYNGKIEDSIICFKKMVYAQKQISKGECMYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=915965 ABXV02_RS09125 WP_004398842.1 1719817..1720944(-) (rapC) [Bacillus subtilis strain PY79]
TTGATATCAATCACATCAGCTGAAGTGGGAATGAAGATTAATGAATGGCATAGGCATATTCAAAAATTCAACGTAACTGA
TGCTGAAATGTTAAAAGCTGAAATAGAACGTGATATAGAGGTTATGGAAGAAGATCAAGACTTGCTTATTTATTATCAAC
TAATGGCCTTTCGCCATAAAATTATGTTGGAATACACGCTGCCATCTGATGAAAACCGAATGGAACTTTCAGAATATTTA
AATAAAATTGAGGGCCATAAGAAAAAATTAGACAATATGCGGGCATATTATTATAACTTCTTCCGCGGGATGTATGAGTT
TAGAAACGGTGAATACACAAGAGCCATTACATATTACAAAAAAGCTGAACGCAAAATTCCTACAATCTCCGACAAGATTG
AAAAAGCTGAGTTTTATTTTAAACTGTCTGAAGTCTATTATCATATGAAAATGACACACATTTCGATGCATTACGCTGAG
CTTTCATACAACATTTATAAGAAACACGAGCTTTACTCTGTTCGTCGTATTCAGTGCCATTTTGTCATTGCCGGTAACTA
CGATGACCTTGAAAATCATGAAAAAGCTCTCCCCCACCTTCAAGAAGCTTTAAAAGGTGCCGAGCTGCTTAAAAGTAAAA
ATACTCATATCTATGCCACTGCGTTTTTCAATCTCGGCAATTGCTATCACAAAATGGACAACTTAAATAAGGCTGCTCGT
TACATCGAACAAGCCTTGGTTCAATACAGAAAAATTAACTCTGACGTACTTCCGCAAGCTTATCATGACCTAGCGTTGAT
TTATTTTAAACAAGGCAAAAAAGAACAAGCAATGGATTGCTTCCGCAAAGGAATCAGAAGTGCTGTAGATTTTAAAGACG
AACTATTTATGAACTTATTTGAAGCATTAGACGTTCTTTATATAAGAAATGGCGATACACCTAAACTTCTCAACATTTTT
TCTCGTTTAGAGAACGGCAAAGGATACCCTTATCTGGAAGAGCTGGCATTGTTAGGAGGCAACCTTTTCGATTATAATGG
AAAAATAGAGGATAGTATCATCTGTTTCAAGAAGATGGTATATGCTCAAAAGCAAATATCGAAAGGGGAATGCATGTATG
AAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(184-246)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-64)

Tetratricopeptide repeat (TPR_8)

(259-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P45943

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.897

100

0.413
  rapF Bacillus subtilis subsp. subtilis str. 168

38.196

100

0.384