Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ABXV02_RS06880 Genome accession   NZ_CP159912
Coordinates   1308046..1308756 (+) Length   236 a.a.
NCBI ID   WP_003229230.1    Uniprot ID   O34977
Organism   Bacillus subtilis strain PY79     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1303046..1313756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS06860 ytfP 1303527..1304789 (-) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -
  ABXV02_RS06865 murJ 1304991..1306625 (+) 1635 WP_003229224.1 lipid II flippase MurJ -
  ABXV02_RS06870 rsuA 1306694..1307413 (+) 720 WP_003229226.1 pseudouridine synthase -
  ABXV02_RS06875 ytzE 1307534..1307755 (-) 222 WP_003152337.1 DeoR family transcriptional regulator -
  ABXV02_RS06880 pptA 1308046..1308756 (+) 711 WP_003229230.1 ABC transporter ATP-binding protein Regulator
  ABXV02_RS06885 ythQ 1308753..1309910 (+) 1158 WP_003229232.1 ABC transporter permease -
  ABXV02_RS06890 pbuO 1309950..1311248 (-) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  ABXV02_RS06895 pepV 1311345..1312736 (+) 1392 WP_004399126.1 dipeptidase PepV -
  ABXV02_RS06900 cysK 1312770..1313705 (-) 936 WP_003229237.1 cysteine synthase A -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26506.56 Da        Isoelectric Point: 5.3508

>NTDB_id=915948 ABXV02_RS06880 WP_003229230.1 1308046..1308756(+) (pptA) [Bacillus subtilis strain PY79]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEESEFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDVQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=915948 ABXV02_RS06880 WP_003229230.1 1308046..1308756(+) (pptA) [Bacillus subtilis strain PY79]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTGGTTGGACTGATCGGAGCTAACGGCGCAGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTTCACGGCATTGAAGAGAGTGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTAGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATGTTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O34977

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432