Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ABXV02_RS03270 Genome accession   NZ_CP159912
Coordinates   604102..605235 (+) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain PY79     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 599102..610235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS03240 ywmC 599899..600582 (+) 684 WP_023592812.1 VWA domain-containing protein -
  ABXV02_RS03245 - 600713..600853 (+) 141 WP_003227702.1 hypothetical protein -
  ABXV02_RS03250 ywmD 600906..601580 (+) 675 WP_003243553.1 VWA domain-containing protein -
  ABXV02_RS03255 - 601674..601835 (+) 162 WP_003227706.1 hypothetical protein -
  ABXV02_RS03260 fdhD 602081..602869 (+) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  ABXV02_RS03265 moaA 602885..603910 (+) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  ABXV02_RS03270 rapC 604102..605235 (+) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  ABXV02_RS03275 - 605391..605870 (+) 480 WP_003244390.1 hypothetical protein -
  ABXV02_RS03280 csbD 605943..606131 (+) 189 WP_003227718.1 stress response protein CsbD -
  ABXV02_RS03285 - 606343..606511 (+) 169 Protein_627 urea ABC transporter substrate-binding protein -
  ABXV02_RS03290 - 606783..606947 (+) 165 WP_015649919.1 hypothetical protein -
  ABXV02_RS03295 ureA 607128..607445 (+) 318 WP_003227724.1 urease subunit gamma -
  ABXV02_RS03300 ureB 607442..607816 (+) 375 WP_003227726.1 urease subunit beta -
  ABXV02_RS03305 ureC 607813..609522 (+) 1710 WP_003243090.1 urease subunit alpha -
  ABXV02_RS03310 ywnA 609657..610058 (+) 402 WP_003227734.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=915928 ABXV02_RS03270 WP_003227715.1 604102..605235(+) (rapC) [Bacillus subtilis strain PY79]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=915928 ABXV02_RS03270 WP_003227715.1 604102..605235(+) (rapC) [Bacillus subtilis strain PY79]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424