Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABK27_RS05545 Genome accession   NZ_AP027899
Coordinates   1147447..1147962 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2018-10-2CC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1142447..1152962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK27_RS05500 (VEE75_10700) csrA 1142899..1143084 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABK27_RS05530 (VEE75_10710) yqaB 1144677..1145243 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABK27_RS05535 (VEE75_10720) yqaA 1145240..1145668 (+) 429 WP_001287457.1 YqaA family protein -
  AABK27_RS05540 (VEE75_10730) gshA 1145741..1147297 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  AABK27_RS05545 (VEE75_10740) luxS 1147447..1147962 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABK27_RS05550 (VEE75_10750) emrB 1148026..1149564 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABK27_RS05555 (VEE75_10760) emrA 1149581..1150753 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABK27_RS05560 (VEE75_10770) emrR 1150880..1151410 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABK27_RS05565 (VEE75_10780) ygaH 1151501..1151836 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AABK27_RS05570 (VEE75_10790) ygaZ 1151826..1152563 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=91585 AABK27_RS05545 WP_001130211.1 1147447..1147962(+) (luxS) [Escherichia coli strain 2018-10-2CC]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=91585 AABK27_RS05545 WP_001130211.1 1147447..1147962(+) (luxS) [Escherichia coli strain 2018-10-2CC]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment