Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   SO572_RS23980 Genome accession   NZ_CP141064
Coordinates   5336564..5336965 (-) Length   133 a.a.
NCBI ID   WP_003249324.1    Uniprot ID   A0AAD2W8A3
Organism   Pseudomonas putida strain XMS-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5331564..5341965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO572_RS23965 (SO572_23955) - 5333528..5335552 (-) 2025 WP_230623075.1 methyl-accepting chemotaxis protein -
  SO572_RS23970 (SO572_23960) - 5335600..5336154 (-) 555 WP_014754673.1 chemotaxis protein CheW -
  SO572_RS23975 (SO572_23965) pilH 5336151..5336516 (-) 366 WP_014592657.1 twitching motility response regulator PilH -
  SO572_RS23980 (SO572_23970) pilG 5336564..5336965 (-) 402 WP_003249324.1 response regulator Regulator
  SO572_RS23985 (SO572_23975) gshB 5337204..5338157 (+) 954 WP_003249322.1 glutathione synthase -
  SO572_RS23990 (SO572_23980) - 5338249..5339154 (+) 906 WP_192907640.1 energy transducer TonB -
  SO572_RS23995 (SO572_23985) - 5339319..5339888 (+) 570 WP_003249318.1 YqgE/AlgH family protein -
  SO572_RS24000 (SO572_23990) ruvX 5339888..5340313 (+) 426 WP_003249316.1 Holliday junction resolvase RuvX -
  SO572_RS24005 (SO572_23995) pyrR 5340363..5340881 (+) 519 WP_003249313.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  SO572_RS24010 (SO572_24000) - 5340894..5341898 (+) 1005 WP_003249311.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14632.88 Da        Isoelectric Point: 6.4772

>NTDB_id=915846 SO572_RS23980 WP_003249324.1 5336564..5336965(-) (pilG) [Pseudomonas putida strain XMS-1]
MEQPLKVMVIDDSRTIRRTAQMLLGEAGCEVITASDGFDALAKIVDHQPSIIFVDVLMPRLDGYQTCAVIKHNSAFKDTP
VILLSSRDGLFDKARGRVVGSDQFLTKPFSKEELLDAIRAHVPGFATPQQHAP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=915846 SO572_RS23980 WP_003249324.1 5336564..5336965(-) (pilG) [Pseudomonas putida strain XMS-1]
ATGGAACAACCCCTGAAGGTGATGGTGATCGACGATTCCCGCACGATCCGCCGCACCGCGCAGATGTTGCTCGGTGAAGC
GGGCTGCGAGGTAATCACCGCCAGCGATGGCTTCGATGCCCTGGCCAAGATCGTCGACCATCAGCCCAGCATCATTTTTG
TCGATGTGCTGATGCCACGCCTGGACGGCTACCAGACCTGCGCGGTAATCAAGCACAACAGTGCCTTCAAGGACACCCCG
GTTATCCTGCTGTCGTCCCGCGATGGGCTGTTCGACAAGGCCCGCGGCCGGGTGGTCGGTTCCGATCAGTTCCTGACCAA
ACCGTTCAGCAAGGAAGAACTGCTCGATGCGATCCGCGCCCATGTGCCCGGGTTTGCCACACCTCAACAACACGCACCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70

90.226

0.632