Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ABXU54_RS09900 Genome accession   NZ_CP159887
Coordinates   2131697..2132332 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain P113     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2126697..2137332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXU54_RS09885 - 2127403..2128647 (+) 1245 WP_003118085.1 lipoprotein-releasing ABC transporter permease subunit -
  ABXU54_RS09890 - 2128735..2129268 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  ABXU54_RS09895 comA 2129399..2131624 (+) 2226 WP_003119806.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABXU54_RS09900 exbB 2131697..2132332 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ABXU54_RS09905 - 2132329..2132769 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  ABXU54_RS09910 lpxK 2132769..2133767 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  ABXU54_RS09915 - 2133805..2133990 (+) 186 WP_003091157.1 Trm112 family protein -
  ABXU54_RS09920 kdsB 2133990..2134754 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ABXU54_RS09925 - 2134754..2135218 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  ABXU54_RS09930 murB 2135215..2136234 (+) 1020 WP_003118084.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=915840 ABXU54_RS09900 WP_003091163.1 2131697..2132332(+) (exbB) [Pseudomonas aeruginosa strain P113]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=915840 ABXU54_RS09900 WP_003091163.1 2131697..2132332(+) (exbB) [Pseudomonas aeruginosa strain P113]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGTA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81