Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   SO572_RS18940 Genome accession   NZ_CP141064
Coordinates   4200045..4200680 (-) Length   211 a.a.
NCBI ID   WP_003247132.1    Uniprot ID   A0AAD2WBR1
Organism   Pseudomonas putida strain XMS-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4195045..4205680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO572_RS18910 (SO572_18900) murB 4196142..4197161 (-) 1020 WP_014754071.1 UDP-N-acetylmuramate dehydrogenase -
  SO572_RS18915 (SO572_18905) - 4197158..4197622 (-) 465 WP_014754072.1 low molecular weight protein-tyrosine-phosphatase -
  SO572_RS18920 (SO572_18910) kdsB 4197622..4198386 (-) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SO572_RS18925 (SO572_18915) - 4198383..4198568 (-) 186 WP_003247142.1 Trm112 family protein -
  SO572_RS18930 (SO572_18920) lpxK 4198613..4199614 (-) 1002 WP_003247136.1 tetraacyldisaccharide 4'-kinase -
  SO572_RS18935 (SO572_18925) - 4199614..4200048 (-) 435 WP_014754073.1 ExbD/TolR family protein -
  SO572_RS18940 (SO572_18930) exbB 4200045..4200680 (-) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SO572_RS18945 (SO572_18935) comA 4200836..4203052 (-) 2217 WP_017147836.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SO572_RS18950 (SO572_18940) - 4203195..4203701 (+) 507 Protein_3723 DUF2062 domain-containing protein -
  SO572_RS18955 (SO572_18945) - 4203711..4204490 (-) 780 WP_003247128.1 ABC transporter permease -
  SO572_RS18960 (SO572_18950) - 4204487..4205419 (-) 933 WP_014754076.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=915840 SO572_RS18940 WP_003247132.1 4200045..4200680(-) (exbB) [Pseudomonas putida strain XMS-1]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=915840 SO572_RS18940 WP_003247132.1 4200045..4200680(-) (exbB) [Pseudomonas putida strain XMS-1]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCACCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCACTGCGGGCCGATTCGCCACTGGGCGAAATCCTGGCAGCGGGCCTCGCCAAC
TCGCGCCATGGTCGCGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATTGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCAGGCCTGATGGTTGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825