Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   U8638_RS11195 Genome accession   NZ_CP141060
Coordinates   2511256..2512629 (+) Length   457 a.a.
NCBI ID   WP_039398772.1    Uniprot ID   A0A5E4YTV1
Organism   Pandoraea sputorum strain EFB03792     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2506256..2517629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8638_RS11175 - 2506500..2507615 (+) 1116 WP_322882009.1 DUF1853 family protein -
  U8638_RS11180 thiD 2507688..2508530 (-) 843 WP_150777631.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  U8638_RS11185 lplT 2508532..2509824 (-) 1293 WP_039398774.1 lysophospholipid transporter LplT -
  U8638_RS11190 alr 2510163..2511233 (+) 1071 WP_150659227.1 alanine racemase -
  U8638_RS11195 radA 2511256..2512629 (+) 1374 WP_039398772.1 DNA repair protein RadA Machinery gene
  U8638_RS11200 - 2512699..2513400 (-) 702 WP_322882010.1 hypothetical protein -
  U8638_RS11205 - 2513477..2515417 (-) 1941 WP_322882011.1 ATP-binding cassette domain-containing protein -
  U8638_RS11210 cls 2515622..2517049 (-) 1428 WP_039398766.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48193.38 Da        Isoelectric Point: 6.9985

>NTDB_id=915791 U8638_RS11195 WP_039398772.1 2511256..2512629(+) (radA) [Pandoraea sputorum strain EFB03792]
MAKAKTVYICTECGGQTPKWAGQCPNCNGWNTLVESVAEASTGHRYQSLAKSTPIRKLAEIEASDVPRFSSGVSEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAHLARERRALYVSGEESGAQIALRAQRLGLGAAGEGGGELDLLAEIQLEKIL
GAIESEKPDVVVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRTAKQSGVTVIMVGHVTKEGSLAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTEKGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDTAQV
PNPRRLAVGLEQNRLAMLLAVMHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSLRNKPLPRGIVAFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSIAIIPKANAPKQPIDGLEVHAVDRLEQAISVVAGL

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=915791 U8638_RS11195 WP_039398772.1 2511256..2512629(+) (radA) [Pandoraea sputorum strain EFB03792]
ATGGCTAAAGCCAAGACCGTCTATATCTGTACCGAGTGCGGTGGCCAGACCCCCAAGTGGGCTGGCCAGTGTCCCAATTG
CAATGGCTGGAATACGCTCGTCGAATCGGTAGCGGAAGCGTCTACCGGTCATCGCTATCAATCGCTGGCCAAGAGCACGC
CGATTCGCAAACTGGCGGAAATCGAAGCCTCTGATGTACCGCGTTTTTCCAGCGGCGTGAGCGAATTCGATCGCGTGCTG
GGCGGAGGTCTCGTCGCGGGCGGTGTGGTGTTGATCGGCGGTGACCCGGGGATCGGCAAGTCGACGCTGCTGCTGCAATC
GCTCGCGCATCTCGCGCGTGAGCGTCGGGCGTTGTATGTGAGCGGCGAAGAGTCCGGCGCGCAGATTGCGTTGCGTGCGC
AGCGGCTCGGCCTTGGGGCGGCTGGCGAGGGCGGTGGCGAACTCGATCTGCTCGCCGAAATCCAGCTTGAGAAGATTCTC
GGTGCGATCGAATCGGAAAAACCCGACGTCGTCGTCATCGACTCGATTCAGACGATCTATTCCGAAGCGCTGACGTCGGC
CCCGGGATCGGTCGCGCAAGTGCGAGAGTGCGCAGCGCAACTGACGCGCACCGCCAAGCAGAGTGGCGTGACGGTCATCA
TGGTCGGCCACGTGACGAAGGAAGGTAGTCTCGCCGGGCCACGCGTGTTGGAACACATCGTGGACACGGTGCTGTACTTC
GAAGGCGATACGCATTCGTCGTATCGTCTGGTGCGCGCGTTCAAGAACCGCTTCGGCGCTGTGAATGAGCTGGGCGTGTT
TGCAATGACGGAAAAGGGGTTGCGTGGCGTGGCCAACCCGTCGGCGCTCTTCCTCTCGCAGCATGAGCAAAGCGTGCCTG
GTTCGTGTGTGCTGGTGACGCAGGAGGGCACACGGCCGCTGCTCGTCGAAGTGCAGGCGCTGGTCGATACTGCGCAGGTG
CCGAATCCGCGACGTCTGGCCGTGGGTCTGGAGCAGAACCGCCTGGCCATGTTGCTGGCGGTGATGCATCGTCATGCGGG
CATCGCCTGTTTCGATCAGGACGTGTTTCTGAATGCCGTCGGCGGCGTGAAGATTACCGAACCGGCTGCCGACCTGGCGG
TGTTGCTCGCGATCCATTCGTCATTGCGCAACAAACCGCTGCCACGAGGCATCGTGGCGTTCGGGGAAGTGGGGCTTGCC
GGGGAAATCCGGCCGAGTCCGCGCGGTCAGGATCGTCTCAAAGAGGCGGCTAAGCTGGGCTTCTCGATTGCGATCATTCC
GAAGGCAAATGCGCCGAAGCAGCCGATCGACGGGCTGGAGGTCCATGCCGTCGACCGTCTGGAACAAGCCATCTCGGTGG
TGGCAGGACTGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4YTV1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.827

100

0.501
  radA Streptococcus pneumoniae Rx1

49.07

94.092

0.462
  radA Streptococcus pneumoniae D39

49.07

94.092

0.462
  radA Streptococcus pneumoniae R6

49.07

94.092

0.462
  radA Streptococcus pneumoniae TIGR4

49.07

94.092

0.462
  radA Streptococcus mitis SK321

49.07

94.092

0.462
  radA Streptococcus mitis NCTC 12261

49.07

94.092

0.462