Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   U8638_RS02805 Genome accession   NZ_CP141060
Coordinates   606792..608282 (-) Length   496 a.a.
NCBI ID   WP_039395518.1    Uniprot ID   A0A239S8W9
Organism   Pandoraea sputorum strain EFB03792     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 601792..613282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U8638_RS02775 mutY 601794..602951 (+) 1158 WP_322881324.1 A/G-specific adenine glycosylase -
  U8638_RS02780 rapZ 602968..603840 (-) 873 WP_150808046.1 RNase adapter RapZ -
  U8638_RS02785 - 604032..604364 (-) 333 WP_039395507.1 PsiF family protein -
  U8638_RS02790 hprK 604547..605512 (-) 966 WP_039395509.1 HPr(Ser) kinase/phosphatase -
  U8638_RS02795 ptsN 605603..606058 (-) 456 WP_039395512.1 PTS IIA-like nitrogen regulatory protein PtsN -
  U8638_RS02800 hpf 606294..606650 (-) 357 WP_039395515.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  U8638_RS02805 rpoN/rpoN1 606792..608282 (-) 1491 WP_039395518.1 RNA polymerase factor sigma-54 Machinery gene
  U8638_RS02810 lptB 608376..609146 (-) 771 WP_039402130.1 LPS export ABC transporter ATP-binding protein -
  U8638_RS02815 lptA 609181..609873 (-) 693 WP_052252464.1 lipopolysaccharide transport periplasmic protein LptA -
  U8638_RS02820 lptC 609870..610547 (-) 678 WP_150661075.1 LPS export ABC transporter periplasmic protein LptC -
  U8638_RS02825 - 610572..611057 (-) 486 WP_322882185.1 KdsC family phosphatase -
  U8638_RS02830 - 611179..612159 (-) 981 WP_322881325.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55111.96 Da        Isoelectric Point: 5.1828

>NTDB_id=915784 U8638_RS02805 WP_039395518.1 606792..608282(-) (rpoN/rpoN1) [Pandoraea sputorum strain EFB03792]
MKPTLQLRTSQHLTLTPQLQQSIRLLQLSTLELQQEVEHALTQNPMLEREDDWLAGSVRVGTDGSLRNERSSSSGSSNDN
GPEASNGHDEARELDGEARFDDNASDNGSDWSLNDFARSGSASDDDDNARPQLHVDHPNLREHLLAQLRLTKASPRDRAL
VEFLIESLDEDGYLGSLLDEIQAEMPEELALETEEINAALALLQSFDPAGVGARSPAECLRLQLQRLPASGVRTLSLRIV
TDHLELLAARDYTRLRRLLGVGEDGLRAAHQLIRSLDPFPGAAYGAPQADYVVPDVLVRKQGSGWTAELNPEVMPRLRIN
EMYARILRNNRNDPGTGNLQQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFTHGEIGMRPLVLREIADTLGLHEST
ISRVTTSKYMLTPFGTFELKYFFGSHVATEAGGAASSTAIRALIKQLIGAEDPQSPLSDSRIAELLAEQGFVVARRTVAK
YREAMRIPAVNLRKSL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=915784 U8638_RS02805 WP_039395518.1 606792..608282(-) (rpoN/rpoN1) [Pandoraea sputorum strain EFB03792]
ATGAAACCGACTCTTCAACTCCGCACCTCTCAGCACCTGACCCTCACGCCGCAGTTGCAGCAATCGATCCGGTTGTTGCA
ACTGTCGACGCTCGAACTTCAACAGGAAGTCGAGCACGCCCTTACCCAGAACCCGATGCTCGAACGCGAGGACGATTGGC
TCGCCGGTTCGGTACGTGTGGGCACAGACGGGTCGCTGCGCAACGAACGGAGTTCGTCGTCGGGCAGTTCGAACGACAAT
GGCCCCGAGGCCTCCAACGGTCACGACGAAGCGCGCGAACTCGATGGTGAGGCCCGCTTCGACGACAACGCGTCGGACAA
CGGCAGCGACTGGAGCCTGAACGACTTCGCCCGCTCCGGCAGCGCATCGGACGACGACGACAATGCGCGTCCGCAACTTC
ACGTCGACCACCCCAATCTCCGCGAACATCTGCTGGCCCAACTGCGCCTGACCAAGGCGAGTCCGCGCGACCGCGCGCTG
GTGGAATTCCTGATCGAATCGCTGGACGAAGACGGCTACCTCGGTAGCCTGCTCGACGAAATTCAGGCCGAAATGCCTGA
AGAACTGGCGCTCGAAACGGAAGAGATCAACGCGGCGCTGGCGCTGCTGCAAAGCTTCGACCCGGCGGGCGTGGGTGCCC
GCAGCCCGGCCGAATGCCTGCGTCTACAGCTCCAGCGCCTGCCCGCTAGCGGTGTGCGCACCCTGTCGCTGCGCATCGTC
ACCGATCACCTGGAACTGCTGGCCGCGCGCGATTACACGCGTCTGCGCCGCCTGCTAGGTGTCGGCGAAGACGGCCTGCG
CGCCGCGCATCAGCTGATTCGCTCGCTGGACCCCTTCCCGGGCGCGGCTTACGGCGCGCCTCAGGCCGACTACGTCGTGC
CGGACGTGCTGGTACGCAAGCAAGGGAGCGGCTGGACGGCGGAGCTGAATCCGGAAGTAATGCCGCGACTGCGTATCAAC
GAGATGTATGCGCGCATTCTCCGAAATAACCGGAACGATCCGGGAACCGGCAACCTCCAACAGCAGTTGCAGGAAGCGCG
CTGGCTGATCAAGAACATCCAGCAACGCTTCGACACGATCCTGCGGGTGGCGCAGGCGATTGTCGAGCGCCAAAAGAACT
TCTTCACGCATGGCGAAATCGGCATGCGGCCCTTGGTTTTACGCGAGATTGCTGATACGCTGGGTTTACATGAATCCACG
ATTTCACGCGTGACAACGAGTAAGTACATGCTCACTCCATTTGGAACCTTCGAGCTCAAGTACTTCTTCGGATCACACGT
GGCAACGGAAGCCGGAGGCGCTGCGTCATCGACCGCCATCCGCGCACTCATCAAGCAACTCATAGGAGCAGAAGACCCGC
AGAGCCCCCTTTCCGATAGCCGTATCGCGGAACTGCTGGCAGAGCAAGGTTTTGTGGTGGCGCGGCGCACTGTCGCGAAG
TACCGCGAGGCCATGCGAATCCCCGCAGTGAACTTGCGCAAATCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(134-323)

Sigma-54, DNA binding domain (Sigma54_DBD)

(339-494)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239S8W9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

69.062

100

0.698