Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ABXU53_RS09050 Genome accession   NZ_CP159886
Coordinates   1946720..1947049 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain P118     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1941720..1952049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXU53_RS09035 - 1942011..1943216 (+) 1206 WP_023102972.1 DegT/DnrJ/EryC1/StrS aminotransferase family protein -
  ABXU53_RS09040 - 1943409..1944437 (+) 1029 WP_003116434.1 glycosyltransferase family 4 protein -
  ABXU53_RS09045 - 1944532..1946529 (+) 1998 WP_031633096.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ABXU53_RS09050 comEA/comE1 1946720..1947049 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  ABXU53_RS09060 - 1947266..1948462 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  ABXU53_RS09065 uvrB 1948650..1950662 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=915734 ABXU53_RS09050 WP_003104586.1 1946720..1947049(+) (comEA/comE1) [Pseudomonas aeruginosa strain P118]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=915734 ABXU53_RS09050 WP_003104586.1 1946720..1947049(+) (comEA/comE1) [Pseudomonas aeruginosa strain P118]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385