Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   SPJ73_RS01560 Genome accession   NZ_CP140795
Coordinates   326558..328951 (+) Length   797 a.a.
NCBI ID   WP_379056582.1    Uniprot ID   -
Organism   Pasteurella multocida strain PMLO     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 321558..333951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPJ73_RS01535 (SPJ73_01530) - 321779..322489 (-) 711 WP_096743091.1 vancomycin high temperature exclusion protein -
  SPJ73_RS01540 (SPJ73_01535) - 322652..323734 (+) 1083 WP_010906895.1 homoserine O-acetyltransferase -
  SPJ73_RS01545 (SPJ73_01540) folK 323721..324218 (-) 498 WP_010906894.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  SPJ73_RS01550 (SPJ73_01545) pcnB 324230..325735 (-) 1506 WP_010906893.1 polynucleotide adenylyltransferase PcnB -
  SPJ73_RS01555 (SPJ73_01550) dksA 325823..326260 (-) 438 WP_010906892.1 RNA polymerase-binding protein DksA -
  SPJ73_RS01560 (SPJ73_01555) rec2 326558..328951 (+) 2394 WP_379056582.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SPJ73_RS01565 (SPJ73_01560) msbA 329004..330752 (+) 1749 WP_083002778.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  SPJ73_RS01570 (SPJ73_01565) lpxK 330784..331761 (+) 978 WP_379056584.1 tetraacyldisaccharide 4'-kinase -
  SPJ73_RS01575 (SPJ73_01570) - 331773..331955 (+) 183 WP_096743090.1 Trm112 family protein -
  SPJ73_RS01580 (SPJ73_01575) kdsB 331957..332733 (+) 777 WP_379056586.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 91059.40 Da        Isoelectric Point: 9.8674

>NTDB_id=915621 SPJ73_RS01560 WP_379056582.1 326558..328951(+) (rec2) [Pasteurella multocida strain PMLO]
MKNALLSISVVTVLSACSLLWLPEHVLLHWHMTLLVFVLLLVSIIICVLCGKNHWISPLIFVLSSVGILGYIHDQARQTL
LQADLIAQLPRKIETEFKIIEVLQQKNYQTFVVSAQLIPQQAKQKMFLQWHAQEKAQIGEVWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLQETIKQTSTLDYQGLLIALAFGERAWLPTDIWQTYQKTSTAHVIAI
SGLHIGLAMGIGYFFIRFIQFVLPLKWVTPTLPIFVGLLFAWFYAELAGFTIPTTRAFFALAVVTLLRLWRRFYSVWQLL
LLVVALLLLANPLIVLSSSFWLSVSAVSALIIWYQIFPFSLLHWRGKSLTEGPWRKCCWFFSLLHLQLGLLWLFTPVQLL
LFQGISLTSFMANVLVVPIYSVILVPLILFAVITQGAFSSWFLANTVAKQVTILLTPLQSHWVVFSQREILCLIAILALS
FIILIWYLYDFKKESLKCYIKVPRFFHLNQMRQLNPSLKWKIYSLATVISLYCFLQVLYKEISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGITLEQVILSHDDNDHVGGAETILKHYPQAKLMTASAQHYGKTDRT
FCEAGKTWTWQHLTFKALSPTKTVKRAKNTDSCVLLISDGSYHILLTGDADIAAEKQFVKQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTTVYNTGELGQISLLFHAKHIEIQTARTDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=915621 SPJ73_RS01560 WP_379056582.1 326558..328951(+) (rec2) [Pasteurella multocida strain PMLO]
ATGAAAAACGCTCTTTTGTCAATATCTGTTGTGACTGTATTAAGTGCATGTTCGTTACTTTGGCTACCTGAACATGTCTT
GCTCCATTGGCATATGACATTGTTAGTCTTCGTATTATTGCTTGTTAGCATAATCATTTGTGTTCTTTGTGGCAAAAATC
ACTGGATTTCGCCTTTGATCTTTGTACTGAGTTCAGTAGGCATTTTAGGCTATATCCACGATCAAGCTCGTCAGACATTA
TTGCAAGCGGACTTGATTGCTCAACTGCCTCGAAAGATAGAGACTGAATTTAAAATCATTGAAGTATTACAACAAAAAAA
CTATCAAACTTTTGTAGTTTCGGCACAATTGATACCGCAACAGGCAAAACAAAAAATGTTTCTTCAATGGCACGCGCAAG
AAAAAGCACAGATTGGCGAAGTTTGGAAAGGAGAGCTGCGGCTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTCGCCAAAGGCATTACCGCTTATGCGACGGTAAAAAGTGCGGTCAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTACAAGAAACGATAAAACAGACCTCAACATTAGACTATCAAGGACTGTTAATCGCGTTGG
CTTTTGGTGAACGGGCATGGTTACCCACAGATATTTGGCAAACTTATCAAAAAACTAGCACAGCACATGTGATTGCCATA
TCGGGTTTACATATTGGACTTGCGATGGGAATAGGTTATTTTTTTATCCGTTTCATTCAGTTTGTGTTGCCATTAAAGTG
GGTGACACCAACCTTACCAATATTCGTAGGGCTTCTTTTTGCCTGGTTTTATGCGGAGCTAGCGGGTTTTACTATACCGA
CGACAAGAGCATTTTTCGCTCTCGCCGTTGTCACTTTGCTACGACTCTGGCGGCGATTTTATAGTGTTTGGCAACTTCTT
TTATTGGTAGTTGCTTTGTTATTGTTAGCAAATCCCTTAATTGTTTTATCCAGTAGCTTTTGGCTGTCAGTGAGCGCAGT
CAGTGCTCTGATTATTTGGTACCAAATATTCCCCTTCTCGTTATTACACTGGCGAGGAAAAAGTCTTACAGAGGGTCCTT
GGCGAAAATGTTGTTGGTTCTTTAGTCTTCTTCATTTACAACTTGGCTTATTATGGCTTTTTACCCCTGTTCAATTATTG
CTTTTTCAGGGAATATCTTTAACGAGCTTTATGGCGAATGTGCTTGTCGTCCCTATTTATAGTGTGATTTTAGTACCATT
GATTTTATTTGCGGTGATCACACAAGGGGCTTTTTCCTCTTGGTTTCTCGCAAATACTGTCGCGAAACAGGTCACGATAC
TTTTAACGCCATTACAATCCCATTGGGTTGTCTTCTCACAGCGGGAAATACTCTGTCTGATCGCGATCTTAGCTTTAAGC
TTTATTATATTGATTTGGTATCTGTATGATTTTAAAAAAGAATCACTTAAGTGCTATATCAAAGTGCCGCGTTTTTTTCA
TCTTAATCAAATGCGGCAGTTAAATCCGTCTTTAAAATGGAAAATTTATTCCCTTGCTACAGTCATCAGTCTTTATTGTT
TTTTACAGGTACTTTATAAGGAGATATCTCAACCCCTTTGGCGTTTAGATACGCTCGATGTGGGGCAGGGGTTAGCTAAC
CTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCATCTTGGGCGGGAGGAAGTATGGCAGAACTAGAAAT
CATCCCTTATTTACAAAGAGAGGGGATTACGTTAGAACAGGTGATTTTAAGTCATGATGATAATGATCATGTTGGGGGCG
CGGAAACAATTCTAAAACATTACCCTCAAGCGAAGCTGATGACAGCGTCTGCTCAACATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGCAAAACTTGGACTTGGCAACACTTAACATTCAAAGCCCTTTCACCGACTAAAACAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTTATCATATCCTTTTAACGGGCGATGCAGATATTGCTG
CGGAAAAGCAGTTCGTGAAGCAGTTAAGTCAACTTGATGTATTACAAGTTGGACATCATGGCAGTAAAACCTCAACTGGA
TATGAACTGCTTTATCAAACACGACCAAAAATCGCGCTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGACAGTATATAACACTGGCGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCTAAACACATCGAAATTCAAACCGCAAGAACGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(213-487)

Domain of unknown function (DUF4131) (DUF4131)

(32-180)

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.128

100

0.512