Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ABXU55_RS02075 Genome accession   NZ_CP159885
Coordinates   444851..445216 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain T117     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 439851..450216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXU55_RS02045 pyrR 440473..440985 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ABXU55_RS02050 ruvX 441097..441531 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  ABXU55_RS02055 - 441531..442100 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  ABXU55_RS02060 - 442149..443042 (-) 894 WP_003162015.1 energy transducer TonB -
  ABXU55_RS02065 gshB 443189..444142 (-) 954 WP_003100943.1 glutathione synthase -
  ABXU55_RS02070 pilG 444397..444804 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  ABXU55_RS02075 pilH 444851..445216 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  ABXU55_RS02080 - 445267..445803 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  ABXU55_RS02085 pilJ 445888..447936 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  ABXU55_RS02090 pilK 447997..448872 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=915618 ABXU55_RS02075 WP_003084587.1 444851..445216(+) (pilH) [Pseudomonas aeruginosa strain T117]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=915618 ABXU55_RS02075 WP_003084587.1 444851..445216(+) (pilH) [Pseudomonas aeruginosa strain T117]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTAATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364