Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ABYA78_RS09560 Genome accession   NZ_CP159883
Coordinates   2018541..2018870 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain 100690     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2013541..2023870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABYA78_RS09545 (ABYA78_09545) - 2014341..2015297 (+) 957 WP_003104579.1 SDR family oxidoreductase -
  ABYA78_RS09550 (ABYA78_09550) - 2015299..2016318 (+) 1020 WP_003158833.1 glycosyltransferase family 4 protein -
  ABYA78_RS09555 (ABYA78_09555) - 2016353..2018350 (+) 1998 WP_023088173.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ABYA78_RS09560 (ABYA78_09560) comEA/comE1 2018541..2018870 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  ABYA78_RS09570 (ABYA78_09570) - 2019087..2020283 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  ABYA78_RS09575 (ABYA78_09575) uvrB 2020471..2022483 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=915532 ABYA78_RS09560 WP_003104586.1 2018541..2018870(+) (comEA/comE1) [Pseudomonas aeruginosa strain 100690]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=915532 ABYA78_RS09560 WP_003104586.1 2018541..2018870(+) (comEA/comE1) [Pseudomonas aeruginosa strain 100690]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385