Detailed information NTG0915527

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABYA78_RS07105
• Genome accession: NZ_CP159883
• Coordinates: 1489355..1490359 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 100690
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1484355..1495359

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABYA78_RS07075 (ABYA78_07075)	fghA	1484447..1485298 (+)	852	WP_043542901.1	S-formylglutathione hydrolase	-
ABYA78_RS07080 (ABYA78_07080)	ispF	1485369..1485842 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABYA78_RS07085 (ABYA78_07085)	truD	1485839..1486906 (+)	1068	WP_034001159.1	tRNA pseudouridine(13) synthase TruD	-
ABYA78_RS07090 (ABYA78_07090)	surE	1486894..1487643 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ABYA78_RS07095 (ABYA78_07095)	-	1487676..1488311 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ABYA78_RS07100 (ABYA78_07100)	-	1488357..1489250 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
ABYA78_RS07105 (ABYA78_07105)	rpoS	1489355..1490359 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ABYA78_RS07110 (ABYA78_07110)	fdxA	1490786..1491109 (-)	324	WP_003119354.1	ferredoxin FdxA	-
ABYA78_RS07115 (ABYA78_07115)	mutS	1491176..1493743 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
ABYA78_RS07120 (ABYA78_07120)	-	1493869..1494876 (-)	1008	WP_043096650.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=915527 ABYA78_RS07105 WP_003113871.1 1489355..1490359(+) (rpoS) [Pseudomonas aeruginosa strain 100690]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=915527 ABYA78_RS07105 WP_003113871.1 1489355..1490359(+) (rpoS) [Pseudomonas aeruginosa strain 100690]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653