Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ABYD36_RS24140 Genome accession   NZ_CP159875
Coordinates   4617687..4618679 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain 12089     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4612687..4623679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABYD36_RS24115 (ABYD36_24115) ygbN 4613342..4614706 (+) 1365 WP_000104439.1 GntP family transporter -
  ABYD36_RS24120 (ABYD36_24120) - 4614745..4614981 (-) 237 WP_000562988.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  ABYD36_RS24125 (ABYD36_24125) - 4614992..4616419 (-) 1428 WP_000863195.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  ABYD36_RS24130 (ABYD36_24130) - 4616419..4617012 (-) 594 WP_000767718.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  ABYD36_RS24135 (ABYD36_24135) - 4617159..4617566 (+) 408 WP_001208070.1 MarR family transcriptional regulator -
  ABYD36_RS24140 (ABYD36_24140) rpoS 4617687..4618679 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  ABYD36_RS24145 (ABYD36_24145) nlpD 4618742..4619836 (-) 1095 WP_224692580.1 murein hydrolase activator NlpD -
  ABYD36_RS24150 (ABYD36_24150) pcm 4620021..4620647 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  ABYD36_RS24155 (ABYD36_24155) surE 4620641..4621402 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  ABYD36_RS24160 (ABYD36_24160) truD 4621383..4622432 (-) 1050 WP_032276728.1 tRNA pseudouridine(13) synthase TruD -
  ABYD36_RS24165 (ABYD36_24165) ispF 4622429..4622908 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ABYD36_RS24170 (ABYD36_24170) ispD 4622908..4623618 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=915399 ABYD36_RS24140 WP_000081550.1 4617687..4618679(-) (rpoS) [Escherichia coli strain 12089]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=915399 ABYD36_RS24140 WP_000081550.1 4617687..4618679(-) (rpoS) [Escherichia coli strain 12089]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715