Detailed information NTG0915372

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: U7E18_RS14975
• Genome accession: NZ_CP140752
• Coordinates: 3231646..3233037 (+)
• Length: 463 a.a.
• NCBI ID: WP_011258418.1
• Uniprot ID: A0A854CLX6
• Organism: Xanthomonas oryzae pv. oryzae strain PkXoo2
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	3230460..3252205	3231646..3233037	within	0

Gene organization within MGE regions

Location: 3230460..3252205

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U7E18_RS14970 (U7E18_14970)	-	3230520..3231561 (+)	1042	Protein_2864	IS3 family transposase	-
U7E18_RS14975 (U7E18_14975)	radA	3231646..3233037 (+)	1392	WP_011258418.1	DNA repair protein RadA	Machinery gene
U7E18_RS14980 (U7E18_14980)	-	3233418..3234067 (-)	650	Protein_2866	IS701-like element ISXo15 family transposase	-
U7E18_RS14985 (U7E18_14985)	-	3234197..3235238 (+)	1042	Protein_2867	IS3 family transposase	-
U7E18_RS14990 (U7E18_14990)	mutS	3236007..3238568 (+)	2562	WP_143680772.1	DNA mismatch repair protein MutS	-
U7E18_RS14995 (U7E18_14995)	-	3238683..3239651 (-)	969	WP_011258802.1	IS5-like element ISXo1 family transposase	-
U7E18_RS15000 (U7E18_15000)	-	3239801..3240004 (+)	204	WP_012445372.1	hypothetical protein	-
U7E18_RS15005 (U7E18_15005)	-	3240001..3241593 (+)	1593	Protein_2871	T6SS effector BTH_I2691 family protein	-
U7E18_RS15010 (U7E18_15010)	-	3241620..3242721 (-)	1102	Protein_2872	IS3 family transposase	-
U7E18_RS15015 (U7E18_15015)	-	3242621..3244306 (-)	1686	Protein_2873	hypothetical protein	-
U7E18_RS15020 (U7E18_15020)	-	3244318..3245553 (-)	1236	WP_117231573.1	ISL3-like element ISXoo13 family transposase	-
U7E18_RS15025 (U7E18_15025)	-	3245618..3246946 (-)	1329	Protein_2875	DUF6531 domain-containing protein	-
U7E18_RS15030 (U7E18_15030)	-	3246965..3247093 (-)	129	WP_256364562.1	hypothetical protein	-
U7E18_RS15035 (U7E18_15035)	-	3247090..3247287 (-)	198	Protein_2877	hypothetical protein	-
U7E18_RS15040 (U7E18_15040)	-	3247441..3248397 (-)	957	WP_011407237.1	IS30-like element IS1112a family transposase	-
U7E18_RS15045 (U7E18_15045)	-	3248450..3248872 (-)	423	WP_075246235.1	hypothetical protein	-
U7E18_RS15050 (U7E18_15050)	-	3248994..3249458 (-)	465	WP_075241452.1	Imm26 family immunity protein	-
U7E18_RS15055 (U7E18_15055)	-	3249722..3250804 (-)	1083	WP_131824965.1	RHS repeat-associated core domain-containing protein	-
U7E18_RS15060 (U7E18_15060)	-	3250886..3252205 (+)	1320	WP_117231520.1	IS701-like element ISXo15 family transposase	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 48847.13 Da
• Isoelectric Point: 7.3924

>NTDB_id=915372 U7E18_RS14975 WP_011258418.1 3231646..3233037(+) (radA) [Xanthomonas oryzae pv. oryzae strain PkXoo2]
MAKAKTAYVCGECGAEYTKWQGQCTECGVWNTLSEIVLESATPGGKASPATSRRIGWAGKAEAPKITALKDVQQSEQARV
STGIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALASMASTLPVLYVTGEESLAQVAGRAVRLDLPLDGLNALSET
GIEHILQHASVARPRLIVADSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMV
DAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSTQQPGSCVMVTREGTRPLMVEVQAL
VDASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAF
GEVGLSGEIRPVPNGEDRLKEAATHGFKRAIVPRANAPKTTSIKGMEIIAVERLRQALEVAAD

Nucleotide

• Length: 1392 bp

>NTDB_id=915372 U7E18_RS14975 WP_011258418.1 3231646..3233037(+) (radA) [Xanthomonas oryzae pv. oryzae strain PkXoo2]
ATGGCGAAGGCGAAGACGGCCTACGTGTGCGGGGAGTGCGGTGCCGAGTACACAAAGTGGCAGGGGCAGTGCACCGAGTG
CGGTGTCTGGAACACGCTGAGCGAAATTGTGCTCGAAAGCGCAACGCCGGGCGGCAAGGCCTCGCCTGCGACCTCGCGGC
GTATCGGTTGGGCCGGCAAGGCCGAGGCGCCCAAGATCACTGCGCTCAAGGACGTGCAGCAGTCCGAGCAGGCGCGCGTG
TCCACCGGCATCGGCGAGTTCGACCGGGTGTTGGGCGGCGGGTTGGTCGAGGGGGCGGTGGTGCTGATCGGCGGCGACCC
GGGCATCGGCAAATCGACGCTGCTGCTGCAGGCGCTGGCGAGCATGGCCTCTACGTTGCCGGTGTTGTACGTCACCGGCG
AAGAATCGCTGGCCCAGGTAGCAGGGCGCGCGGTGCGCCTGGATCTGCCGCTGGACGGCCTGAACGCCCTGTCCGAAACC
GGTATCGAACACATCCTGCAGCACGCCAGCGTGGCGCGGCCGAGGCTGATCGTGGCCGATTCGGTGCAGACCTTGTGGAC
CGAATCGCTTACCGCAGCGCCAGGCTCGGTGAGCCAGGTGCGCGAGAGCGCAGCGCGGCTGGTGCGCTACGCCAAGGAAA
CCGGCACCGCCGTGTTTCTGGTCGGCCATGTGACCAAGGAAGGCGGTATCGCCGGGCCACGCGTGCTTGAGCACATGGTC
GATGCGGTGCTGTATTTCGAAGGCGAAAGTGGCAGCCGATTCCGCCTGTTGCGCGCGTTCAAGAACCGCTTCGGTGCGGT
CAACGAGCTAGGCGTCTTCGCGATGGGCGAGAAGGGCCTCAAGGAAGTCTCCAACCCATCGGCAATCTTCCTGTCCGGTG
GCAGCACTCAGCAACCGGGCAGTTGCGTGATGGTCACCCGCGAAGGCACCCGCCCCCTGATGGTGGAGGTGCAGGCCTTG
GTGGATGCCTCGCCGTTGTCCAATCCGCGCCGCGTTGCGGTGGGGCTGGAGCAGAACCGGCTGGCGATGTTGCTGGCGGT
CCTGCACCGCCATGGCGGCATCGTGGTCGGCGATCAGGACGTGTTCGTCAATGTGGTGGGTGGCATCCGCGTGCAGGAAA
CGGCGGCCGATCTGCCCGTGCTGCTGGCGGTGCTGTCGTCGCTGCGCGACCGGCCGTTGGCCGAAAAGACCATCGCGTTC
GGCGAAGTGGGACTGTCCGGCGAAATCCGCCCGGTACCCAACGGCGAGGACCGCCTGAAGGAAGCGGCGACGCATGGCTT
CAAGCGCGCCATTGTGCCCCGCGCCAATGCGCCCAAGACGACCAGCATCAAGGGAATGGAAATTATCGCAGTGGAGCGCT
TGAGACAGGCGCTGGAGGTGGCGGCAGACTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (90-228)

• Subunit ChlI of Mg-chelatase (ChlI) (352-436)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

3D structure

• AlphaFold DB: A0A854CLX6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.38	100	0.484
radA	Streptococcus mitis NCTC 12261	42.484	99.136	0.421
radA	Streptococcus pneumoniae Rx1	42.484	99.136	0.421
radA	Streptococcus pneumoniae D39	42.484	99.136	0.421
radA	Streptococcus pneumoniae R6	42.484	99.136	0.421
radA	Streptococcus pneumoniae TIGR4	42.484	99.136	0.421
radA	Streptococcus mitis SK321	42.266	99.136	0.419