Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   U5U21_RS21850 Genome accession   NZ_CP140722
Coordinates   3883291..3883578 (-) Length   95 a.a.
NCBI ID   WP_000648331.1    Uniprot ID   A0A2A8KZX2
Organism   Bacillus anthracis strain MH-VW     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3878291..3888578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5U21_RS21820 (U5U21_21900) - 3878452..3878799 (+) 348 WP_000426312.1 DUF4257 domain-containing protein -
  U5U21_RS21825 (U5U21_21905) - 3878884..3879108 (+) 225 WP_000162601.1 hypothetical protein -
  U5U21_RS21830 (U5U21_21910) - 3879296..3880471 (-) 1176 WP_000832287.1 MFS transporter -
  U5U21_RS21835 (U5U21_21915) - 3880674..3881609 (-) 936 WP_000877936.1 aldo/keto reductase -
  U5U21_RS21840 (U5U21_21920) - 3881717..3882025 (+) 309 WP_001259894.1 helix-turn-helix transcriptional regulator -
  U5U21_RS21845 (U5U21_21925) - 3882066..3883016 (-) 951 WP_001089035.1 serine protease -
  U5U21_RS21850 (U5U21_21930) abrB 3883291..3883578 (-) 288 WP_000648331.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  U5U21_RS21855 (U5U21_21935) - 3883695..3885571 (-) 1877 Protein_4017 FtsX-like permease family protein -
  U5U21_RS21860 (U5U21_21940) nadE 3885843..3886661 (+) 819 WP_000174879.1 ammonia-dependent NAD(+) synthetase -
  U5U21_RS21865 (U5U21_21945) - 3886708..3887169 (-) 462 WP_000024993.1 NUDIX hydrolase -
  U5U21_RS21870 (U5U21_21950) - 3887201..3887398 (-) 198 WP_001048092.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10645.40 Da        Isoelectric Point: 6.3179

>NTDB_id=915173 U5U21_RS21850 WP_000648331.1 3883291..3883578(-) (abrB) [Bacillus anthracis strain MH-VW]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=915173 U5U21_RS21850 WP_000648331.1 3883291..3883578(-) (abrB) [Bacillus anthracis strain MH-VW]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCCTTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516