Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   U5U21_RS03945 Genome accession   NZ_CP140722
Coordinates   496464..496748 (+) Length   94 a.a.
NCBI ID   WP_000843035.1    Uniprot ID   A0A6L7HTM5
Organism   Bacillus anthracis strain MH-VW     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 491464..501748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U5U21_RS03930 (U5U21_03965) rnmV 492286..492843 (-) 558 WP_000692830.1 ribonuclease M5 -
  U5U21_RS03935 (U5U21_03970) - 493058..493825 (-) 768 WP_000895823.1 TatD family hydrolase -
  U5U21_RS03940 (U5U21_03975) metG 493991..495973 (-) 1983 WP_000134128.1 methionine--tRNA ligase -
  U5U21_RS03945 (U5U21_03980) abrB 496464..496748 (+) 285 WP_000843035.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  U5U21_RS03950 (U5U21_03985) rsmI 496769..497644 (-) 876 WP_000267808.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  U5U21_RS03955 (U5U21_03990) - 497613..497903 (-) 291 WP_000414342.1 GIY-YIG nuclease family protein -
  U5U21_RS03960 (U5U21_03995) - 497890..498630 (-) 741 WP_001055363.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  U5U21_RS03965 (U5U21_04000) yabA 498751..499101 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  U5U21_RS03970 (U5U21_04005) - 499116..499943 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  U5U21_RS03975 (U5U21_04010) holB 499949..500932 (-) 984 WP_000169560.1 DNA polymerase III subunit delta' -
  U5U21_RS03980 (U5U21_04015) tmk 500968..501594 (-) 627 WP_000677237.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10550.27 Da        Isoelectric Point: 4.7174

>NTDB_id=915144 U5U21_RS03945 WP_000843035.1 496464..496748(+) (abrB) [Bacillus anthracis strain MH-VW]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLFLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=915144 U5U21_RS03945 WP_000843035.1 496464..496748(+) (abrB) [Bacillus anthracis strain MH-VW]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATTTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L7HTM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851