Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   U6038_RS13835 Genome accession   NZ_CP140715
Coordinates   2877090..2877947 (-) Length   285 a.a.
NCBI ID   WP_062032467.1    Uniprot ID   A0A7H8SLC5
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2875847..2876593 2877090..2877947 flank 497


Gene organization within MGE regions


Location: 2875847..2877947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS13825 (U6038_13825) - 2875847..2876612 (+) 766 Protein_2662 IS5-like element ISAba31 family transposase -
  U6038_RS13830 (U6038_13830) - 2876634..2877044 (+) 411 WP_333656792.1 hypothetical protein -
  U6038_RS13835 (U6038_13835) tonB2 2877090..2877947 (-) 858 WP_062032467.1 energy transducer TonB Machinery gene

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32599.09 Da        Isoelectric Point: 6.3661

>NTDB_id=915130 U6038_RS13835 WP_062032467.1 2877090..2877947(-) (tonB2) [Acinetobacter johnsonii strain FAHZZU3110hy]
MPLAHDWWKDPIFTATVVLAVFLHLVILTLQFAMPQENDAAVKEIAVTLRPSDQKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=915130 U6038_RS13835 WP_062032467.1 2877090..2877947(-) (tonB2) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACCGTTGTGCTGGCTGTGTTTTTGCATCTCGTGAT
TTTGACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCGGTTACCTTGCGTCCTTCTGATC
AAAAAATTGAAAACGCAGATTTTTTAGCACAAGCCGATCAACAAGGTTCAGGGACCTTTCGTGAGTCACATCGCATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAACAGCAGCGTGAAACTTTAGAACAGATCCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAACTGTTAATGACGACTTTAAGTTGGCAAAAACAAGCTGAGGATAACCAGCGCAAAAAAG
CCATGGAAGAAATGAACAGCCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTACAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCCAAGCAAGATATTTCGGCCGCCTATCTTGA
AAAGTTCCGTCAGAAAGTGGAATTTTATGGCAACCGTTACTATCCAGAAGCAGCTAAACAGCAGCGGCTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGCATCAGGAGGCATCCGCGCTATTCGTCTGATTGATAGTTCGGGCCATGAAATGCTC
GATGAGGCTGCAAAAGCGTCGGTGCGTAAAGCCGCACCATTTGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGACCCGGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8SLC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.286

98.246

0.73