Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   U6038_RS01860 Genome accession   NZ_CP140715
Coordinates   389732..391954 (-) Length   740 a.a.
NCBI ID   WP_333654931.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384732..396954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS01835 (U6038_01835) - 384766..385122 (-) 357 WP_058868814.1 chaperone modulator CbpM -
  U6038_RS01840 (U6038_01840) - 385133..386086 (-) 954 WP_333656666.1 DnaJ C-terminal domain-containing protein -
  U6038_RS01845 (U6038_01845) - 386230..386682 (-) 453 WP_104221756.1 DUF2147 domain-containing protein -
  U6038_RS01850 (U6038_01850) - 386882..387757 (-) 876 WP_104221757.1 Hsp33 family molecular chaperone HslO -
  U6038_RS01855 (U6038_01855) - 387808..389649 (-) 1842 WP_125274172.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  U6038_RS01860 (U6038_01860) priA 389732..391954 (-) 2223 WP_333654931.1 primosomal protein N' Machinery gene
  U6038_RS01865 (U6038_01865) gspF 392107..393312 (+) 1206 WP_333654934.1 type II secretion system inner membrane protein GspF -
  U6038_RS01870 (U6038_01870) gspG 393346..393783 (+) 438 WP_010325797.1 type II secretion system major pseudopilin GspG -
  U6038_RS01875 (U6038_01875) - 394067..394402 (+) 336 WP_333654938.1 hypothetical protein -
  U6038_RS01880 (U6038_01880) - 394564..394902 (+) 339 WP_004978826.1 tRNA-binding protein -
  U6038_RS01885 (U6038_01885) lnt 394969..396528 (-) 1560 WP_333654940.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84148.02 Da        Isoelectric Point: 8.8808

>NTDB_id=915111 U6038_RS01860 WP_333654931.1 389732..391954(-) (priA) [Acinetobacter johnsonii strain FAHZZU3110hy]
MPENTLSTTPSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDSAILDAKVLSLLTWSAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDDHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKQITQCILEAQDFKPQAMTLAQMPLTPNDEQKRAIQNILKARHSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGRASIVIGTRSAIYTPL
PHLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHSELKPIGLGTAKVEENLQALFPNFDVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQNFLQEHAQALRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRARMHFYIRQWWQTV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=915111 U6038_RS01860 WP_333654931.1 389732..391954(-) (priA) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGCCAGAAAATACACTTTCCACCACACCAAGCTACCGTATTCGTGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAACTCACTGATGAGAAACCACTCGATTTAGGCTTTAAACTTAAAGCCATAACTGAGTTGCTC
GATGACAGCGCTATTCTAGATGCTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCCATTGGTGA
AGTGATGCATGCTGCTTTGCCCAGCTTTTTACGCCAAGGCAAACCTTATAACCTATTGGCGCGGATGTGGAAGCTGATCG
ATGATCATGCCGAAGACAAATTGAAGCGTTCTGAAAAACAACAAGATGCCTATAAAATTTTAAAGCTGCATCCCACAGGA
ACGTCTGAAAACATTCTAAATTTGGCTGGCATTGAAACTGCGACCTTAAAAGCCTTAGAAAAAAAGCAAATCACCCAGTG
CATACTTGAAGCCCAAGACTTTAAACCGCAAGCCATGACACTGGCGCAAATGCCTCTCACGCCCAATGATGAACAAAAGC
GTGCCATTCAAAACATTCTCAAAGCTCGTCATAGCTACCATGCTTTCTTACTGGATGGTTTAACCGGTAGTGGCAAAACT
GAAGTCTATTTGCAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAAGTCTTGGTATTAGTGCCTGAAATTGGTCTCAC
CCCACAAACAGTGAGCCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTGCAAGCCTGGCAAAGCGCACAAACGGGCAGAGCTTCGATTGTGATTGGCACACGTTCTGCCATCTATACGCCCCTT
CCACATTTGGGTTTGATTGTCTTAGATGAAGAACATGACTTATCTTTCAAGCAACAAGAAGGCTTCCGCTACCACGCTCG
TGATGTGGCTTTATACCGTGCGCACTTAGAAAACTGTCCGATTATCCTCGGTTCGGCAACGCCAAGTATCGACAGTTATG
CGTTGGTCGAACAAGGTAAAATGACCCGTTTGGAGTTGGACCAACGTGCAGGTGTGGCCGTGATGCCGAAAATGCATGTG
ATCGATCTGAAAGTGGCACAAAAACAAAATGGCATCAGCCAACAGCTGATTCATGAAGTACAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTCTTAAATCGTCGTGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCCAAGT
GCCCACATTGCGATGCCAATTTTACCGTGCATCGACAGCCCTACCAGCATTTGCACTGTCACCACTGCGGCACCATCCAC
CGCATGCCTGAACACTGCCCGCAATGTCAGCATAGCGAACTGAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGCACTGTTCCCAAATTTTGACGTAATTCGGGTTGATCGTGACTCGACCAGTCGAGTCGGCAGCTGGCAAAAAA
TCTATAACAAGATTCAGAAAAGTGAACCTATCATTTTGCTCGGCACCCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTGACTTTGGTGGCGATTTTAGACATCGACTCGGGCTTACTCAGTGTTGACTTTCGTGCCACAGAACGTACTGCACAACT
CATCATCCAAGTCGCTGGACGTGCTGGGCGCGGCGAGAAAAAAGGCGAAGTCTATTTACAAACTCTACGTCCAGACCATC
CTTTGCTGAATACCCTGCTGGAATCGGGCTATCGCAGCTTTGCCAAGCAAACCTTGAAAGAGCGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGACCAAGAATTGAACCAAAACTTTTTACAAGAGCATGC
ACAAGCACTGCGCCAAGCCTCAGAAAACAGTATTGATATTTGGGGGCCCATTCCTGCGCCGATGGAGCGTAAAGCAGGCC
GCTATCAAGCGCATATGGTACTACTGTCCAAAGACCGTGCACGAATGCATTTTTACATTCGTCAGTGGTGGCAAACTGTC
TGGCACAATAAACCGCATGGTATGAAATTGAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.819

98.784

0.709