Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   U6038_RS01310 Genome accession   NZ_CP140715
Coordinates   270137..270460 (+) Length   107 a.a.
NCBI ID   WP_004692786.1    Uniprot ID   N9D026
Organism   Acinetobacter johnsonii strain FAHZZU3110hy     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 265137..275460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6038_RS01285 (U6038_01285) hemC 265800..266720 (+) 921 WP_333654808.1 hydroxymethylbilane synthase -
  U6038_RS01290 (U6038_01290) - 266733..267512 (+) 780 WP_333654810.1 uroporphyrinogen-III synthase -
  U6038_RS01295 (U6038_01295) - 267509..268351 (+) 843 WP_333654812.1 hypothetical protein -
  U6038_RS01300 (U6038_01300) - 268356..269549 (+) 1194 WP_333654814.1 heme biosynthesis protein HemY -
  U6038_RS01305 (U6038_01305) - 269557..269985 (+) 429 WP_333654816.1 thioesterase family protein -
  U6038_RS01310 (U6038_01310) hns 270137..270460 (+) 324 WP_004692786.1 H-NS family nucleoid-associated regulatory protein Regulator
  U6038_RS01315 (U6038_01315) gspN 270658..271368 (+) 711 WP_058868751.1 type II secretion system protein N -
  U6038_RS01320 (U6038_01320) - 271368..272192 (+) 825 WP_039890327.1 type II secretion system protein N -
  U6038_RS01325 (U6038_01325) gspD 272232..274589 (+) 2358 WP_333654821.1 type II secretion system secretin GspD -
  U6038_RS01330 (U6038_01330) - 274673..275419 (+) 747 WP_004692779.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12025.75 Da        Isoelectric Point: 9.5383

>NTDB_id=915107 U6038_RS01310 WP_004692786.1 270137..270460(+) (hns) [Acinetobacter johnsonii strain FAHZZU3110hy]
MPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=915107 U6038_RS01310 WP_004692786.1 270137..270460(+) (hns) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGCCAGATATTAGTAATTTATCTGTAGAAGAGTTAAAGCGTCTACAAATCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCTTATACTCAAATTAACGCGATTGCGGAAAATGTAGGCTTAAGCATTGAACAAATTTTAG
AGTTTGGCGCGACCAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTACCGTAACAAAGGTAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTAGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTCTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9D026

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86