Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   TQH59_RS14390 Genome accession   NZ_CP140708
Coordinates   2892292..2893149 (-) Length   285 a.a.
NCBI ID   WP_125280266.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2887292..2898149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS14370 (TQH59_14370) miaB 2888625..2890082 (+) 1458 WP_279682675.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  TQH59_RS14375 (TQH59_14375) - 2890121..2891197 (+) 1077 WP_333640561.1 PhoH family protein -
  TQH59_RS14380 (TQH59_14380) ybeY 2891255..2891734 (+) 480 WP_281964041.1 rRNA maturation RNase YbeY -
  TQH59_RS14385 (TQH59_14385) - 2891836..2892246 (+) 411 WP_333640562.1 hypothetical protein -
  TQH59_RS14390 (TQH59_14390) tonB2 2892292..2893149 (-) 858 WP_125280266.1 energy transducer TonB Machinery gene
  TQH59_RS14395 (TQH59_14395) - 2893410..2894087 (+) 678 WP_333640563.1 hypothetical protein -
  TQH59_RS14400 (TQH59_14400) - 2894243..2894953 (+) 711 WP_333640564.1 DUF3108 domain-containing protein -
  TQH59_RS14405 (TQH59_14405) - 2895044..2895619 (+) 576 WP_078426184.1 xanthine phosphoribosyltransferase -
  TQH59_RS14410 (TQH59_14410) - 2895959..2896951 (+) 993 WP_333640565.1 sensor domain-containing diguanylate cyclase -
  TQH59_RS14415 (TQH59_14415) - 2897164..2897538 (+) 375 WP_029575121.1 hypothetical protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32588.02 Da        Isoelectric Point: 6.6632

>NTDB_id=915088 TQH59_RS14390 WP_125280266.1 2892292..2893149(-) (tonB2) [Acinetobacter johnsonii strain FAHZZU3567hy]
MPLAHDWWKDPIFTATVVLAVFLHLVVLTLQFAMPQENDASVKEIAVTLRPSDKKNENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNGSGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=915088 TQH59_RS14390 WP_125280266.1 2892292..2893149(-) (tonB2) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACTGTTGTGCTGGCGGTGTTTTTGCATCTTGTAGT
TTTAACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGTCAGTGAAAGAAATTGCGGTGACTTTGCGTCCTTCTGATA
AAAAAAATGAAAATGCAGATTTTTTAGCACAAGCCGATCAACAAGGTTCAGGGACATTTCGTGAGTCACATCGCATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAACAGCAGCGTGAAACTTTAGAACAGATCCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAACTGTTAATGACGACTTTGAGTTGGCAAAAACAAGCTGAGGATAACCAGCGCAAAAAAG
CCATGGAAGAAATGAACAGCCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTACAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCCAAGCAAGATATTTCGGCCGCCTATCTTGA
AAAGTTCCGTCAGAAAGTTGAGTTTTATGGCAACCGTTACTATCCAGAAGCAGCTAAACAGCAGCGGCTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGGATCAGGAGGCATCCGCGCCATTCGCCTGATTGATAGTTCGGGCCATGAGATGCTT
GATGAGGCTGCAAAAGCGTCGGTGCGTAAAGCCGCACCATTTGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGACCCAGCAGAGGCAGAGTTTGAAGTGCATTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.286

98.246

0.73