Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   TQH59_RS14055 Genome accession   NZ_CP140708
Coordinates   2828102..2828902 (-) Length   266 a.a.
NCBI ID   WP_004697674.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2823102..2833902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS14035 (TQH59_14035) - 2824170..2824868 (-) 699 WP_333640551.1 YfgM family protein -
  TQH59_RS14040 (TQH59_14040) hisS 2824896..2826191 (-) 1296 WP_125280203.1 histidine--tRNA ligase -
  TQH59_RS14045 (TQH59_14045) ispG 2826195..2827316 (-) 1122 WP_086210453.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  TQH59_RS14050 (TQH59_14050) - 2827335..2828111 (-) 777 WP_125280204.1 helix-turn-helix domain-containing protein -
  TQH59_RS14055 (TQH59_14055) pilF 2828102..2828902 (-) 801 WP_004697674.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  TQH59_RS14060 (TQH59_14060) rlmN 2828919..2830154 (-) 1236 WP_004697671.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  TQH59_RS14065 (TQH59_14065) ndk 2830277..2830708 (-) 432 WP_004983508.1 nucleoside-diphosphate kinase -
  TQH59_RS14070 (TQH59_14070) iscX 2830819..2831019 (-) 201 WP_004697668.1 Fe-S cluster assembly protein IscX -
  TQH59_RS14075 (TQH59_14075) - 2831110..2831661 (-) 552 WP_004697666.1 phosphatase PAP2 family protein -
  TQH59_RS14080 (TQH59_14080) - 2831857..2833137 (-) 1281 WP_333640552.1 glycosyltransferase family 1 protein -
  TQH59_RS14085 (TQH59_14085) - 2833278..2833694 (-) 417 WP_004983505.1 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30076.05 Da        Isoelectric Point: 9.1263

>NTDB_id=915086 TQH59_RS14055 WP_004697674.1 2828102..2828902(-) (pilF) [Acinetobacter johnsonii strain FAHZZU3567hy]
MKKPVSKLYLALTLGVSVWYLVGCQTVNTKGDPSKAVQVRTQLAAEYIKSNDYDAAKRTLDQALDIDSRDASANMMMGVL
LQREGSPQNVEKAERYFKHAIAAEPKNAQARNNYGTYLYQIGRYNDAIDQLQVAGSTLGYDQRYRALENLGRAYLQVGRV
AEAEAAFKQALQVNSGAYLAMIEMAEISYLRQQNAEATQYYEQFVRAVGEKNLDARALWIGIRIARANHDTMGSQVLVNQ
LRALYPDSQEYKRYLQLQYTTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=915086 TQH59_RS14055 WP_004697674.1 2828102..2828902(-) (pilF) [Acinetobacter johnsonii strain FAHZZU3567hy]
TTGAAAAAACCCGTTTCTAAACTTTACCTTGCGCTGACACTGGGTGTGTCAGTGTGGTACTTGGTGGGTTGCCAAACCGT
GAATACGAAAGGTGATCCAAGTAAAGCAGTACAAGTTAGAACGCAGTTGGCGGCTGAATATATTAAGTCGAATGATTATG
ATGCTGCGAAACGTACATTGGATCAAGCATTAGACATCGACTCTCGTGATGCATCTGCAAATATGATGATGGGCGTGTTG
TTACAGCGTGAAGGCAGTCCACAAAATGTGGAAAAGGCAGAGCGTTATTTTAAGCATGCAATTGCGGCTGAGCCAAAAAA
TGCACAGGCTCGTAACAACTACGGTACGTATTTATATCAAATTGGGCGTTATAATGACGCGATTGATCAACTTCAAGTTG
CAGGTTCAACTTTAGGGTATGATCAACGTTATCGAGCATTGGAAAATTTAGGTCGTGCGTATCTACAAGTAGGTCGAGTG
GCAGAAGCAGAAGCAGCTTTTAAACAAGCCCTACAGGTAAACTCAGGTGCCTATCTTGCCATGATCGAAATGGCGGAAAT
TTCATATTTACGTCAGCAAAATGCTGAAGCTACGCAGTACTATGAACAGTTTGTGCGAGCGGTGGGCGAGAAAAATTTAG
ATGCGCGTGCGCTTTGGATTGGGATCCGAATTGCGCGAGCAAATCATGACACGATGGGTTCGCAAGTACTGGTCAACCAG
TTACGTGCATTGTATCCAGACAGTCAAGAATACAAACGTTATTTGCAATTACAGTACACTACTGAGGCCGTATGGAAGTA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(149-206)

Tetratricopeptide repeat (TPR_19)

(89-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

68.657

100

0.692
  pilF Acinetobacter baylyi ADP1

64.662

100

0.647