Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   TQH59_RS12295 Genome accession   NZ_CP140708
Coordinates   2468696..2473174 (-) Length   1492 a.a.
NCBI ID   WP_201703982.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 2463696..2478174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS12265 (TQH59_12265) elsL 2464744..2465247 (-) 504 WP_125280402.1 cell wall-recycling L,D-carboxypeptidase ElsL -
  TQH59_RS12270 (TQH59_12270) - 2465247..2465639 (-) 393 WP_125280401.1 YbaN family protein -
  TQH59_RS12275 (TQH59_12275) - 2465737..2466615 (+) 879 WP_201703978.1 DUF1853 family protein -
  TQH59_RS12280 (TQH59_12280) - 2466803..2466919 (+) 117 WP_373868118.1 entericidin A/B family lipoprotein -
  TQH59_RS12285 (TQH59_12285) dapE 2467037..2468170 (+) 1134 WP_176537359.1 succinyl-diaminopimelate desuccinylase -
  TQH59_RS12290 (TQH59_12290) - 2468236..2468691 (-) 456 WP_201703980.1 hypothetical protein -
  TQH59_RS12295 (TQH59_12295) chpA 2468696..2473174 (-) 4479 WP_201703982.1 Hpt domain-containing protein Regulator
  TQH59_RS12300 (TQH59_12300) - 2473339..2475411 (-) 2073 WP_279670505.1 methyl-accepting chemotaxis protein -
  TQH59_RS12305 (TQH59_12305) - 2475462..2475998 (-) 537 WP_004694490.1 chemotaxis protein CheW -
  TQH59_RS12310 (TQH59_12310) - 2476004..2476372 (-) 369 WP_004694491.1 response regulator -
  TQH59_RS12315 (TQH59_12315) pilG 2476400..2476783 (-) 384 WP_004694493.1 twitching motility response regulator PilG Regulator
  TQH59_RS12320 (TQH59_12320) - 2477063..2477701 (+) 639 WP_058869160.1 hypothetical protein -

Sequence


Protein


Download         Length: 1492 a.a.        Molecular weight: 166797.53 Da        Isoelectric Point: 4.3912

>NTDB_id=915082 TQH59_RS12295 WP_201703982.1 2468696..2473174(-) (chpA) [Acinetobacter johnsonii strain FAHZZU3567hy]
MKEILKHLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELDPLFEKWYAEPTHQETLLSIRRHFHTLKGSGRMVGAKSA
GETAWVVEDTLNRVISGAVPLTATVQKFAKTVFKLFQFKLYPIFKAVQEIDLDLRPLVLIGQQLQQNQSLEPALEELLQL
SNHLNSNDVVTGLELSDIEVVDSEPQVADASEQDDQVHDVLEETLAIFIEEAEDHLATIDQFLNVDETKVQDYNGLIRAL
HTLRGSSSMAQIEHVFNASSKVENLFKTLVQEEIVSTSKEISLLTQYAEFVRDYLHVLGRGTNEQLDVIYATFTTAWDNY
GFSIEDVADELNPQGMVSKLIELNIDLLLDAEFEFDQRAKVEYPDYIQHLGEQAKQLLEFTNNRAAQGIHDFTFELYAGY
QALLEKPELLNVDYAYELFGQAHQEFIHLFDTLAAGQRVILTEEVHKVLNELMAFVQQDVESTSTTVIEPVAEAIVSRNT
LQPSLDLAQISQQIASDHQYKQSNTANTNFDDDLLDIFLEEAEELLMGMDQDLNTWSKNGNDTAALNNLMRYLHTLKGGA
NMISAPFIGSIAHELESIYERVIRQQIATTPQLISIIRLVQDDVADRIQVIRTDKVDYPATATINVLHNIQSLVEGTTVT
TTVSEPLVEAFVAAVEEPLSNVDRTIEAEATAVESATAIEEPSIVDNTDVTVIEQLDTPSLVQEEAVSAVEEAASLLSIV
EETFLEEAEEILATTDGLLKQWTEQRSDRSVLLQLQRAAHSLKGGARMAENEPVGAIAYELETTFEQFAVHNFSSNVYDP
LLQTAFEWLKQAIFKRDFSNYDGLKNSLASIDYVDVIAQLPTRVTQIDLLNAVPSFEFVQGDGTEPPAMLGEWKETTHLD
GGNEMIRISADLVEKMIDLSGENAINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSENLRYADF
DPLEMDQYSSLNQLSKSLAESASDLVDFKSTLAEKIRDAEGLLLQQSRIQAEIQESLMRTRLVPFSRMLPRLQRIVRQTA
STLNRPTELVVHNTEGELDRTILERLVTPFEHMLRNAIDHGIEDAEQRGAAKKSATGQIELNISRQGTDVIVSFKDDGKG
IDESTIKAKALNLGLIKADQVLDKQEILQFIFHPGFSTAKEVTQISGRGVGLDVVQSEIKALGGHVTVESEIGFGTTFII
RVPTTVAVSDALMVKAGDQQYAIPLAQIDRIVRIAPTALDQYFHSKDDQFKIDGVSYKLRYLSEFLSNQPIPRLSNIGHS
LPVLLIKGNSGQTIALLVDQLIGSRAQIVVKPVGQQFASIGAIAGATILGNGHVCLILDGQNIARQILSTKRVTHAVDHR
DFGRHQDTRRLVMIVDDSVTVRKVTSRLLERQGFDIVTAKDGVDAMEQLESVKPDLMLLDIEMPRMDGFEVTNLVRHHEI
HQNLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLLAEKQG

Nucleotide


Download         Length: 4479 bp        

>NTDB_id=915082 TQH59_RS12295 WP_201703982.1 2468696..2473174(-) (chpA) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGAAAGAAATATTAAAACATTTAGTTGAAACGACAACGCTTCCGGAAGATAGTTATCTAGATCAAGATGCAGAAATTCT
TGAAATTTTTGTTGAAGAAATTGAAGAAATCTTCGTTGAGTTAGATCCATTATTTGAAAAGTGGTATGCTGAACCGACAC
ATCAAGAAACCTTGTTGAGCATACGTCGTCACTTCCATACCTTAAAAGGTTCTGGTCGTATGGTGGGGGCAAAGTCAGCA
GGTGAAACGGCGTGGGTAGTTGAAGACACCTTAAACCGTGTGATTTCAGGGGCTGTACCGCTTACAGCAACGGTTCAAAA
ATTTGCTAAGACAGTATTCAAACTGTTTCAATTTAAACTGTATCCTATATTCAAAGCGGTACAGGAAATTGATCTTGATC
TTCGTCCATTGGTTTTAATTGGACAACAATTACAACAAAATCAAAGTTTAGAACCTGCTCTAGAAGAGTTGCTACAACTG
TCTAATCATCTAAATAGTAATGATGTCGTGACAGGATTAGAGCTGAGCGATATTGAAGTGGTTGACTCTGAGCCGCAAGT
TGCAGACGCATCTGAACAGGATGATCAAGTACATGATGTCCTTGAAGAAACTTTAGCGATCTTCATTGAAGAAGCGGAAG
ACCATTTAGCGACTATCGATCAGTTCTTAAATGTAGATGAAACCAAAGTACAAGATTACAATGGTTTAATCCGTGCTTTA
CATACATTGCGCGGTAGTTCGTCTATGGCGCAAATTGAGCATGTCTTTAATGCCAGCTCAAAAGTTGAAAATCTATTTAA
AACCTTGGTTCAAGAAGAGATCGTTTCTACCTCGAAGGAGATCTCTTTACTCACCCAATATGCTGAATTTGTACGTGATT
ATTTACATGTGCTTGGGCGTGGTACGAACGAACAGCTTGACGTGATTTACGCCACGTTCACTACGGCTTGGGATAACTAT
GGTTTCAGTATTGAAGACGTAGCTGATGAGCTAAACCCACAAGGTATGGTCTCGAAGCTGATTGAGTTAAATATTGACCT
GTTGCTTGATGCCGAGTTTGAGTTTGATCAGCGTGCTAAGGTTGAATATCCAGACTATATTCAGCACTTAGGTGAACAAG
CAAAACAATTGCTGGAATTCACCAATAACCGTGCTGCTCAAGGAATTCATGATTTTACTTTTGAGCTATATGCAGGTTAT
CAAGCCTTACTGGAAAAGCCTGAATTACTCAATGTAGATTATGCATACGAGTTATTTGGTCAGGCACATCAAGAATTTAT
CCATTTATTTGACACTTTAGCTGCGGGTCAGCGCGTCATTCTGACTGAAGAAGTGCATAAAGTTCTGAATGAATTAATGG
CCTTCGTACAGCAAGATGTTGAATCGACTTCGACGACCGTAATTGAACCTGTTGCTGAGGCTATTGTTTCTAGAAATACT
TTACAACCAAGCCTTGATCTTGCGCAGATTTCGCAGCAAATTGCATCGGATCATCAGTACAAGCAATCGAATACGGCCAA
TACCAATTTTGATGATGATTTGCTTGATATCTTCTTGGAAGAAGCTGAAGAATTATTGATGGGGATGGATCAGGATCTTA
ATACTTGGTCTAAAAATGGCAATGATACCGCGGCACTCAATAATTTAATGCGTTATTTGCACACCTTAAAAGGTGGTGCC
AATATGATTTCTGCACCTTTTATTGGTTCGATTGCACACGAATTAGAGTCTATTTATGAGCGTGTGATTCGTCAGCAAAT
AGCCACAACGCCACAGTTGATCAGCATCATTCGCTTAGTACAGGATGACGTCGCAGACCGAATTCAGGTCATTCGTACCG
ATAAGGTTGATTATCCAGCAACAGCGACGATCAATGTACTGCATAACATTCAGAGCTTAGTTGAGGGTACGACTGTTACA
ACTACAGTATCCGAGCCTTTAGTTGAAGCGTTTGTTGCGGCAGTTGAAGAACCTTTATCTAATGTAGATAGAACGATTGA
AGCTGAGGCAACTGCGGTTGAGTCAGCAACTGCGATTGAAGAGCCGAGTATAGTTGATAACACTGACGTTACGGTCATTG
AACAGCTGGATACTCCGTCACTTGTCCAAGAAGAAGCAGTCAGCGCTGTTGAAGAAGCAGCTAGTCTTTTATCAATTGTT
GAAGAAACCTTCTTGGAAGAAGCTGAAGAAATTTTAGCGACTACGGATGGCTTACTGAAACAGTGGACTGAACAACGTAG
TGACCGTAGTGTGTTACTACAATTGCAACGTGCTGCGCACAGCTTAAAAGGCGGCGCGCGTATGGCGGAGAATGAACCCG
TTGGTGCGATTGCTTATGAGCTAGAAACTACATTTGAGCAATTTGCTGTACATAATTTCAGTTCAAACGTGTATGACCCA
TTATTGCAAACCGCATTTGAATGGTTAAAACAAGCCATCTTCAAACGTGATTTTAGTAATTATGACGGTTTGAAAAATAG
CTTAGCATCTATTGATTATGTGGATGTGATTGCACAATTACCGACGCGTGTAACTCAAATTGATTTACTCAATGCGGTAC
CAAGTTTTGAGTTTGTGCAAGGTGATGGTACTGAGCCGCCAGCAATGCTGGGTGAGTGGAAAGAAACGACTCACTTGGAT
GGTGGTAATGAGATGATTCGTATCTCAGCTGATTTGGTTGAAAAAATGATCGACCTATCAGGTGAAAATGCAATTAACCG
TTCACGTATTGAGATGGATTTAGGTCAACTCGGCAATACGTTGAACGAGATGGAGCTTGCAATTAAGCGTTTGGCGGATC
AGTTACGTCGAATGGAGGGTGAGCTTGAGAGTCAAATTATTGCGAAGCACGGTTCTGAAAACTTGCGCTACGCAGACTTT
GATCCCTTGGAAATGGACCAATATTCATCGCTCAATCAATTGTCCAAATCTTTAGCCGAATCAGCTTCGGATTTGGTCGA
CTTCAAGAGCACTTTGGCTGAGAAAATTCGTGATGCGGAAGGCTTGTTATTACAACAATCCCGTATTCAAGCGGAAATTC
AAGAAAGCTTAATGCGGACACGTTTAGTGCCGTTCTCCCGTATGTTGCCGCGTTTGCAGCGTATTGTACGTCAGACCGCC
TCAACTTTGAACCGTCCAACGGAATTGGTCGTTCATAACACTGAAGGTGAATTAGACCGTACGATTCTTGAACGTTTGGT
AACACCATTTGAGCATATGCTACGTAACGCAATCGACCACGGTATTGAAGATGCGGAACAACGTGGCGCTGCGAAAAAAT
CAGCGACAGGCCAAATTGAACTGAACATTAGTCGTCAAGGTACAGATGTTATCGTCAGCTTTAAAGATGATGGTAAGGGT
ATTGATGAAAGCACGATTAAAGCGAAAGCGCTAAACCTAGGTTTAATTAAAGCCGATCAAGTGCTAGATAAACAGGAAAT
CTTACAGTTTATTTTCCATCCGGGTTTTAGTACGGCCAAAGAAGTGACGCAAATTTCTGGACGTGGTGTTGGTCTTGATG
TGGTACAAAGTGAAATTAAAGCACTGGGTGGACATGTCACGGTTGAATCGGAAATTGGATTCGGTACGACCTTCATTATT
CGCGTACCGACTACGGTAGCGGTGAGCGATGCTTTGATGGTAAAAGCCGGTGATCAACAATATGCGATTCCATTGGCGCA
GATTGATCGTATTGTGCGTATTGCTCCAACAGCATTGGATCAGTATTTCCACAGCAAAGATGACCAATTCAAAATTGATG
GTGTGAGTTATAAACTGCGCTATTTATCTGAGTTTTTATCCAATCAGCCGATCCCGCGTTTGAGTAATATTGGACATTCA
TTGCCGGTGTTGTTGATTAAAGGCAACAGTGGACAAACCATTGCCTTATTGGTCGATCAGTTGATTGGTTCACGTGCGCA
AATTGTAGTGAAGCCAGTTGGGCAACAGTTTGCCAGCATTGGTGCAATTGCTGGTGCAACGATTTTGGGTAATGGACATG
TGTGTTTGATTTTAGATGGTCAGAACATTGCACGTCAGATTTTAAGTACCAAGCGTGTGACGCATGCAGTTGATCACCGT
GACTTTGGTCGCCATCAGGATACACGTCGTTTAGTGATGATTGTGGATGACTCGGTCACGGTACGTAAGGTGACATCGCG
CTTATTAGAGCGTCAAGGCTTTGATATTGTGACAGCAAAAGACGGTGTCGATGCGATGGAACAGCTTGAGAGCGTTAAAC
CAGACCTGATGTTGCTGGATATTGAAATGCCACGTATGGATGGTTTCGAAGTAACGAACTTGGTTCGTCACCACGAAATT
CACCAGAACTTGCCGATTATTATGATTACATCGCGTACGGGTGAAAAACACCGTGAACGTGCTTTCAGCTTGGGCGTGAC
ACACTACATGGGCAAACCATTCCAAGAGGCAGAATTACTTGCCAACATTCAGCAACTATTGGCTGAAAAGCAGGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.924

100

0.619