Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   TQH59_RS01825 Genome accession   NZ_CP140708
Coordinates   379865..382087 (-) Length   740 a.a.
NCBI ID   WP_125280758.1    Uniprot ID   A0AA42MQQ1
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 374865..387087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS01805 (TQH59_01805) - 375501..375965 (-) 465 WP_125281017.1 DUF2147 domain-containing protein -
  TQH59_RS01810 (TQH59_01810) - 376106..376857 (+) 752 Protein_338 IS5 family transposase -
  TQH59_RS01815 (TQH59_01815) - 377015..377890 (-) 876 WP_087011236.1 Hsp33 family molecular chaperone HslO -
  TQH59_RS01820 (TQH59_01820) - 377941..379782 (-) 1842 WP_279697798.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  TQH59_RS01825 (TQH59_01825) priA 379865..382087 (-) 2223 WP_125280758.1 primosomal protein N' Machinery gene
  TQH59_RS01830 (TQH59_01830) gspF 382240..383445 (+) 1206 WP_125280759.1 type II secretion system inner membrane protein GspF -
  TQH59_RS01835 (TQH59_01835) gspG 383479..383916 (+) 438 WP_333641121.1 type II secretion system major pseudopilin GspG -
  TQH59_RS01840 (TQH59_01840) - 384200..384535 (+) 336 WP_168159339.1 hypothetical protein -
  TQH59_RS01845 (TQH59_01845) - 384696..385034 (+) 339 WP_333641125.1 tRNA-binding protein -
  TQH59_RS01850 (TQH59_01850) lnt 385101..386660 (-) 1560 WP_317110551.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84202.15 Da        Isoelectric Point: 8.9695

>NTDB_id=915070 TQH59_RS01825 WP_125280758.1 379865..382087(-) (priA) [Acinetobacter johnsonii strain FAHZZU3567hy]
MPENTLSTTPSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDSAILDAKVLSLLTWSAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDDHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKKITQCILEAQDFKPQAMTLAQMPLTPNDEQKRAIQNILKARHSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGRASIVIGTRSAIYTPL
PHLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHSELKPIGLGTAKVEENLQALFPNFDVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQSFLQEHAQVLRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRPRMHFYIRQWWQNV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=915070 TQH59_RS01825 WP_125280758.1 379865..382087(-) (priA) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGCCAGAAAATACACTTTCCACCACACCAAGCTACCGTATTCGTGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAACTCACTGATGAGAAACCACTCGATTTAGGCTTTAAACTCAAAGCCATAACTGAGTTGCTC
GATGACAGCGCTATTCTAGATGCTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCCATTGGTGA
AGTGATGCATGCTGCTTTGCCCAGCTTTTTACGCCAAGGCAAACCCTATAATTTACTGGCGCGGATGTGGAAGCTGATTG
ATGATCATGCCGAAGACAAATTGAAGCGTTCTGAAAAACAACAAGATGCCTATAAAATTTTAAAGCTACATCCTACAGGA
ACGTCTGAAAACATTCTAAATTTGGCTGGCATTGAAACTGCGACCTTAAAAGCCTTAGAAAAAAAGAAAATCACCCAGTG
CATACTTGAAGCCCAAGACTTTAAACCGCAAGCCATGACACTGGCACAAATGCCCCTCACGCCCAATGATGAACAAAAGC
GTGCCATTCAAAATATTCTCAAAGCTCGTCATAGCTACCACGCTTTCTTACTGGATGGTTTAACCGGTAGTGGCAAAACT
GAAGTCTACTTGCAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAAGTTTTGGTATTAGTGCCTGAAATTGGCCTCAC
CCCACAAACAGTGAGTCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTTCAAGCCTGGCAAAGCGCACAAACAGGCAGAGCTTCGATTGTGATTGGCACACGTTCTGCCATCTATACGCCCCTT
CCACATTTGGGTTTGATTATCTTAGATGAAGAACATGACTTATCTTTCAAGCAACAAGAAGGCTTCCGCTACCACGCTCG
TGATGTGGCTTTATACCGTGCACACTTAGAAAACTGTCCGATTATCCTCGGTTCTGCAACGCCAAGTATCGACAGTTATG
CGTTGGTCGAACAAGGTAAAATGACCCGTTTGGAGTTGGACCAACGTGCAGGTGTGGCCGTGATGCCGAAAATGCATGTG
ATCGATCTGAAAGTGGCACAAAAACAAAATGGCATCAGCCAACAGCTGATTCATGAAGTACAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGTCGCGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCCAAGT
GCCCCCACTGCGATGCCAATTTTACCGTGCATCGACAGCCCTATCAGCATTTGCACTGTCACCACTGCGGCACCATCCAC
CGCATGCCTGAACATTGTCCGCAATGCCAGCATAGCGAACTGAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGCACTGTTCCCCAACTTTGATGTAATTCGGGTGGATCGTGACTCGACCAGTCGGGTCGGTAGTTGGCAAAAAA
TCTATAACAAGATTCAGAAAAGTGAACCCATCATTTTGCTCGGTACTCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTGACTTTGGTGGCGATTTTAGACATTGACTCAGGCTTACTCAGTGTTGACTTTCGTGCCACAGAACGTACTGCACAGCT
CATCATCCAAGTTGCGGGACGTGCTGGGCGCGGTGAGAAAAAAGGCGAAGTGTATTTACAAACTTTACGTCCAGACCATC
CTTTGCTGAATACCCTGCTAGAATCGGGCTATCGCAGCTTTGCCAAGCAAACGTTGAAAGAACGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGACCAAGAACTGAACCAAAGCTTTTTACAAGAGCATGC
ACAAGTACTGCGCCAAGCCTCAGAAAACAGTATTGATATTTGGGGGCCCATTCCTGCGCCGATGGAACGTAAAGCAGGCC
GCTATCAAGCGCATATGGTACTACTGTCCAAAGACCGTCCGCGGATGCATTTTTACATTCGTCAGTGGTGGCAAAATGTC
TGGCATAACAAACCGCATGGTATGAAATTGAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(210-371)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.819

98.784

0.709