Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   TQH59_RS01275 Genome accession   NZ_CP140708
Coordinates   261381..261704 (+) Length   107 a.a.
NCBI ID   WP_004692786.1    Uniprot ID   N9D026
Organism   Acinetobacter johnsonii strain FAHZZU3567hy     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 256381..266704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TQH59_RS01250 (TQH59_01250) hemC 257044..257964 (+) 921 WP_333641037.1 hydroxymethylbilane synthase -
  TQH59_RS01255 (TQH59_01255) - 257977..258756 (+) 780 WP_333641039.1 uroporphyrinogen-III synthase -
  TQH59_RS01260 (TQH59_01260) - 258753..259595 (+) 843 WP_201953311.1 hypothetical protein -
  TQH59_RS01265 (TQH59_01265) - 259600..260793 (+) 1194 WP_333641042.1 heme biosynthesis protein HemY -
  TQH59_RS01270 (TQH59_01270) - 260801..261229 (+) 429 WP_125273404.1 acyl-CoA thioesterase -
  TQH59_RS01275 (TQH59_01275) hns 261381..261704 (+) 324 WP_004692786.1 H-NS family nucleoid-associated regulatory protein Regulator
  TQH59_RS01280 (TQH59_01280) gspN 261901..262611 (+) 711 WP_125280643.1 type II secretion system protein N -
  TQH59_RS01285 (TQH59_01285) - 262611..263435 (+) 825 WP_004692782.1 type II secretion system protein N -
  TQH59_RS01290 (TQH59_01290) gspD 263475..265835 (+) 2361 WP_333641045.1 type II secretion system secretin GspD -
  TQH59_RS01295 (TQH59_01295) - 265923..266666 (+) 744 WP_333641046.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12025.75 Da        Isoelectric Point: 9.5383

>NTDB_id=915066 TQH59_RS01275 WP_004692786.1 261381..261704(+) (hns) [Acinetobacter johnsonii strain FAHZZU3567hy]
MPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRYRNKGNAAE
TWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=915066 TQH59_RS01275 WP_004692786.1 261381..261704(+) (hns) [Acinetobacter johnsonii strain FAHZZU3567hy]
ATGCCAGATATTAGTAATTTATCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGCGGAAGCTTTAATTGCATCTAAAAA
AGATCAAGCAATTGAAGATGCTTATACTCAAATTAACGCGATTGCGGAAAATGTAGGCTTAAGCATTGAACAAATTTTAG
AGTTTGGCGCGACCAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTACCGTAACAAAGGCAATGCTGCTGAG
ACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTGGTGGCTCAGTTAGAAAAAGGTGCGAAGCTTGAAGATTTTCTAAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9D026

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

99.065

0.86